Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i07f
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||...    96   3e-21
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    31   0.16 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   2.7  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    26   4.7  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   6.2  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   6.2  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    25   8.2  

>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 237

 Score = 96.3 bits (229), Expect = 3e-21
 Identities = 52/111 (46%), Positives = 71/111 (63%)
 Frame = +1

Query: 256 LVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKASDPLILEKCKDIKWHFIGHLQTNK 435
           LVAVSK  PVE ++EAYNAGQRHFGENY+ E   K    L+ +   D++WHFIG LQ++K
Sbjct: 26  LVAVSKFHPVETLMEAYNAGQRHFGENYMQEFLKKVE--LMPD---DVQWHFIGSLQSSK 80

Query: 436 INKLLGSPGLFMVETVDSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGDQ 588
             K+     L+ +ET+D+EK A  +N         +  L V +QVNTSG++
Sbjct: 81  CKKIASVKNLYSIETIDTEKKARLVNS---AREALQLPLNVYIQVNTSGEE 128


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +1

Query: 214 VARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKAS 366
           +++   D+P+ AP  VAV++ +P EL     N  QR   E Y  E   K++
Sbjct: 374 ISKTFDDVPKRAP--VAVTEFRPSELFELNENKSQRSLAEEYEEEFLKKSN 422


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 265  QQPILVLSEVGLYFFW 218
            ++P L+ + VGLYFFW
Sbjct: 1090 EKPYLIHNVVGLYFFW 1105


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 327 EVPLASIVSFHNKFDRFNF*YS 262
           + P+  ++SF N F+RF F Y+
Sbjct: 205 QTPIKDLLSFSNVFNRFRFLYA 226


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
            complex subunit Taf111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 319  RHFGENYVNELSDKASDPLILEKCKDIKWHFIGHLQTNKINKLLGSP 459
            RH  +  +N L+ +   P    KC +     +GH++TNKI  L G P
Sbjct: 926  RHAAKEGIN-LNGEGRKPTT-RKCSNCGQ--VGHMKTNKICPLFGRP 968


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 391  KDIKWHFIGHLQTNKINKLLG 453
            +++KW +   LQ+ K+N LLG
Sbjct: 950  EEVKWKYWNRLQSVKLNGLLG 970


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -3

Query: 377 INGSLALSLNSFT*FSPKCLWPAL*ASTISSTGLIFDTATNLGAI*GRSLL 225
           +N  L+ S  S     P  + P+   S  +S+ L+   +TNLG++   SLL
Sbjct: 29  VNSKLSQSTTSVN-AGPSLISPSFLDSYANSSSLLHKPSTNLGSLKTSSLL 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,274,324
Number of Sequences: 5004
Number of extensions: 45045
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)