Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i07f
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26507| Best HMM Match : Ala_racemase_N (HMM E-Value=0.39)           76   3e-24
SB_5082| Best HMM Match : Fn_bind (HMM E-Value=6.8)                    30   1.6  
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)                    29   2.8  
SB_50010| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_30753| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_26507| Best HMM Match : Ala_racemase_N (HMM E-Value=0.39)
          Length = 195

 Score = 76.2 bits (179), Expect(2) = 3e-24
 Identities = 35/60 (58%), Positives = 45/60 (75%)
 Frame = +1

Query: 166 DIMYGLKTVLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVN 345
           +I   LKTVL +I     +R ++L ++ PRLVAVSK KP+E I+EAYN GQRHFGENYV+
Sbjct: 9   NIGLALKTVLQKINEVAEKRPENLQKLVPRLVAVSKTKPIECIIEAYNNGQRHFGENYVS 68



 Score = 53.2 bits (122), Expect(2) = 3e-24
 Identities = 26/44 (59%), Positives = 33/44 (75%)
 Frame = +1

Query: 457 PGLFMVETVDSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGDQ 588
           P L+MVETVDSEKLA  LN  W K+   +E L+VMV+VNTS ++
Sbjct: 70  PNLYMVETVDSEKLAATLNNSWGKF-PNREPLKVMVEVNTSEEK 112


>SB_5082| Best HMM Match : Fn_bind (HMM E-Value=6.8)
          Length = 367

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
 Frame = +1

Query: 334 NYVNELSDKASDPLILEKCKDI-KWHFI---GHLQTNKINKLLGSPGLFMVETVDSEKLA 501
           N+ ++LS+K+S+    +    + K  +I   G++  NK+  +L   G ++ + +  ++  
Sbjct: 2   NHTSQLSEKSSNRDRNDHATSVGKLGYITENGYVDLNKVQLVLSELG-YVEDEIFKKRQQ 60

Query: 502 DNLN-KQWLKYRKEKERLRVM 561
           DN+  K+ LK  KE+ER++ M
Sbjct: 61  DNIAYKKRLKANKERERIQKM 81


>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +1

Query: 172 MYGLKTVLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAG 315
           M  +K  +    IAVA     LP +A RLV  +KIK  +++  A+ AG
Sbjct: 51  MVEVKDKMETTRIAVATGKVLLPTVAFRLVKENKIKKGDVLTTAHLAG 98


>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
          Length = 883

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/60 (23%), Positives = 33/60 (55%)
 Frame = +1

Query: 190 VLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKASD 369
           +++   +++   S   PQ+ P++  V+   P+E+I E + A  ++F  N +   S+K+ +
Sbjct: 319 IVNSQAVSIGNSSSPAPQVQPQVKIVNTPIPIEVIKE-HAAKLKNFFNNLIRLASEKSPE 377


>SB_50010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 580

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 239 GRSLLLLATAISICERTVFNPYIMSTLASTSLVITEDLIILIHQKSMN 96
           G  +++LA  +    RT+ N +++S   S  LV T  L   IHQ + N
Sbjct: 49  GNFMVVLAVVLFHRMRTITNYFVVSLAVSDLLVATLSLPFRIHQTTHN 96


>SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1194

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 427 TNKINKLLGSPGLFMVETVDSEKLADNLNKQWLKY 531
           + K  K+ GS GL MV    S ++A   N  W+KY
Sbjct: 73  SGKDKKVYGSYGLAMVLRCPSHQVALGANYTWIKY 107


>SB_30753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
 Frame = +1

Query: 58  LLINFIMYLVAI*FILFWWMRIIKSSVMTSEVDAKVDIMYGLKTV-----LSQIEIAVAR 222
           L I+  + L  I F LF  +R IKS +  +++D    +++ +  +      S++  AV R
Sbjct: 24  LSIHSFIILFIIVFKLFR-LRAIKSKIKIADIDDTPQMLFLIIPIKQAAQASRVHTAVIR 82

Query: 223 RSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKASD 369
           + K      P    ++++  + +   AY+A       +    L+ KASD
Sbjct: 83  KVKYPSDNVPVKYMIAEMTKMAVTGRAYSAYDNIQNMSVTKMLTSKASD 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,969,208
Number of Sequences: 59808
Number of extensions: 295788
Number of successful extensions: 755
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)