Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i05r
         (536 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650...    30   1.3  
02_01_0081 - 562163-564406                                             27   7.2  
01_01_0660 + 5029070-5029177,5029303-5029398,5029494-5029556,502...    27   7.2  
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542...    27   9.5  

>01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,
            6501915-6502156,6502229-6502457,6503020-6503184,
            6503279-6503605,6504150-6504191,6504333-6504400,
            6504748-6504934,6506249-6506311,6506748-6506790,
            6506919-6507019,6507110-6507184,6507359-6507445,
            6507593-6507682,6507906-6507992,6508585-6508783,
            6509113-6509177,6509502-6509606,6509726-6509871,
            6510100-6510224,6510335-6510437,6510482-6510596,
            6510734-6510869,6511298-6511387,6511484-6511578,
            6511698-6511763,6511868-6511936,6512034-6512147,
            6512241-6512448,6512545-6512600,6512818-6513552
          Length = 1671

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
 Frame = +1

Query: 211  FNEIKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYS--LCILNSGSPT 384
            F  I  F +V+ R    LG+F+      GSS+S     + ++I+   +    + ++GSPT
Sbjct: 1317 FQSISAFSAVIDR----LGEFDDLLDGNGSSLSKPDNIDGINIIFKSTGPTVLSSNGSPT 1372

Query: 385  RLTKPGEVISAIDLSICTPQLASSLSWSTLCSTYNSDH 498
            + + P  V+   +L++ TP+  + L           DH
Sbjct: 1373 Q-SNPSMVLEICNLTLLTPRSGNILITDLTMELKEKDH 1409


>02_01_0081 - 562163-564406
          Length = 747

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 67 HHIHQPCLLLSTNNP 23
          HH+H P  LLS NNP
Sbjct: 5  HHLHLPLRLLSRNNP 19


>01_01_0660 +
           5029070-5029177,5029303-5029398,5029494-5029556,
           5029836-5029913,5030446-5030614,5030797-5031180,
           5031959-5032042,5032143-5032288,5032810-5033070,
           5033147-5033328,5033421-5033586,5033650-5033703,
           5034702-5034965,5035088-5035303,5035388-5035540,
           5035630-5035827
          Length = 873

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 145 IAAIVDGICFVSIYVPHPSLQIFNEIKNFISVLPRPFMIL 264
           IA +++  C +       +L I+NEI+NFI+V+    + L
Sbjct: 820 IAGVLERACLMLRPSCAENLPIYNEIENFIAVIKNQILAL 859


>01_01_0703 -
           5425713-5425862,5426302-5426451,5426853-5426964,
           5427120-5427481,5427578-5427712,5427812-5427889,
           5427989-5428174,5428266-5428452,5428552-5428658,
           5428732-5428806,5428885-5429040,5429165-5429437,
           5429548-5429643,5429724-5429814,5429883-5430385
          Length = 886

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 376 SPTRLTKPGEVISAIDLSICTPQLASSLSWSTLCSTY 486
           S +RL  PG   +A  LS  TP+ A+   W  +C +Y
Sbjct: 715 SSSRLVPPGAGAAAAQLSPVTPEAATLPRW--ICQSY 749


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,763,676
Number of Sequences: 37544
Number of extensions: 268211
Number of successful extensions: 600
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)