Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12i05r
(536 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 56 2e-08
U80028-2|AAN73869.1| 351|Caenorhabditis elegans Serpentine rece... 31 0.40
U50312-3|AAA92320.2| 494|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z81073-1|CAB03029.1| 645|Caenorhabditis elegans Hypothetical pr... 28 4.9
AF067950-4|AAG24157.1| 351|Caenorhabditis elegans Serpentine re... 28 4.9
AF022981-10|AAG24203.1| 360|Caenorhabditis elegans Serpentine r... 27 6.5
Z81458-3|CAB03823.2| 487|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF251126-1|AAF71273.1| 487|Caenorhabditis elegans UDP-GlcNAc:a-... 27 8.6
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 56.0 bits (129), Expect = 2e-08
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 MILGDFNSHHTSWGSSVS-NSYGYELLDILDMY-SLCILNSGSPTRLTKPGEVISAIDLS 429
+I GD N+HH++W S S ++ G EL +++D++ L I N TR IS+ D++
Sbjct: 35 IISGDVNAHHSAWHSEGSEDTRGRELAELIDLHPDLIIQNEQVHTRADTYS--ISSPDIT 92
Query: 430 ICTPQLASSLSWSTLCSTYNSDHYPI 507
ICT LA+ WSTL SDH P+
Sbjct: 93 ICTADLATKCHWSTLYK-LGSDHIPM 117
>U80028-2|AAN73869.1| 351|Caenorhabditis elegans Serpentine
receptor, class h protein88 protein.
Length = 351
Score = 31.5 bits (68), Expect = 0.40
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +1
Query: 61 YGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGI--CFVSIYVPHPSLQIFN-EIKNF 231
+GG C+L ++ SS+ +P + F V + D C V+ Y+ P+L F+ + NF
Sbjct: 45 FGGYCILYKSPKEMSSYRVPLFN--FHVWTCLADVFLNCLVTPYIFLPTLTGFSVGLLNF 102
Query: 232 ISVLPR 249
+ V P+
Sbjct: 103 LGVPPK 108
>U50312-3|AAA92320.2| 494|Caenorhabditis elegans Hypothetical
protein B0222.3 protein.
Length = 494
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 133 CFSVIAAIVDGICFVSIY--VPHPSLQIFNEIKNFISVLPRPFMILGDFNSHHTSWGSS 303
C I+ ++ GI IY V H L+ N +KN + LP + + FN+ W S
Sbjct: 166 CSWFISPVLSGIISSIIYMIVDHTVLRTANPLKNGLRALPVFYFVCMAFNALMVFWDGS 224
>Z81073-1|CAB03029.1| 645|Caenorhabditis elegans Hypothetical
protein F30F8.1 protein.
Length = 645
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 7 LYSKSLGYSCLREDRADGYGGVCLLIRNSSTFSSFPLPSHSNC 135
+YS LG+ + + RAD V ++ N + F H NC
Sbjct: 408 VYSSRLGHIRIPDTRADTKDYVYFMVINPGEYGGFRFFGHPNC 450
>AF067950-4|AAG24157.1| 351|Caenorhabditis elegans Serpentine
receptor, class h protein87 protein.
Length = 351
Score = 27.9 bits (59), Expect = 4.9
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +1
Query: 61 YGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGI--CFVSIYVPHPSLQIFN-EIKNF 231
+GG C+L ++ S++ +P + F V + D C + Y+ P+L F+ + NF
Sbjct: 45 FGGYCILYKSPKEMSTYRIPLFN--FHVWTCLADVFLNCLGTPYIFLPTLTGFSVGLLNF 102
Query: 232 ISVLPR 249
+ V P+
Sbjct: 103 LGVPPK 108
>AF022981-10|AAG24203.1| 360|Caenorhabditis elegans Serpentine
receptor, class h protein82 protein.
Length = 360
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 61 YGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGICFVSIYVPHPSLQIFN-EIKNFIS 237
+GG C+L +++S S+ LP + F + + Y PSL F+ NF+
Sbjct: 45 FGGYCILFKSTSQMGSYRLPLFNFHFWTCLVDIMINALATPYFFFPSLAGFSVGFLNFLG 104
Query: 238 VLP 246
V P
Sbjct: 105 VPP 107
>Z81458-3|CAB03823.2| 487|Caenorhabditis elegans Hypothetical
protein C03E10.4 protein.
Length = 487
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 458 REDANWGVQMDRSMALITSPGFVRRVGEPEFKMHRLYMSKISNNS 324
+E+ WG DR + I VR + +H+L SKI +S
Sbjct: 433 KENGGWGDIRDRQLCEINKSPLVRVSSQSASVLHKLLNSKIQFSS 477
>Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical
protein T06D8.10 protein.
Length = 1490
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 91 SSTFSSFPLPSHSNCFSVIAAIVDGIC 171
SST S+ P+P+ +CF+ GIC
Sbjct: 141 SSTISNCPIPTIDHCFATNYRSFSGIC 167
>Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical
protein T06D8.10 protein.
Length = 1490
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 91 SSTFSSFPLPSHSNCFSVIAAIVDGIC 171
SST S+ P+P+ +CF+ GIC
Sbjct: 141 SSTISNCPIPTIDHCFATNYRSFSGIC 167
>AF251126-1|AAF71273.1| 487|Caenorhabditis elegans
UDP-GlcNAc:a-6-D-mannoside
b1,2-N-acetylglucosaminyltransferase II protein.
Length = 487
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 458 REDANWGVQMDRSMALITSPGFVRRVGEPEFKMHRLYMSKISNNS 324
+E+ WG DR + I VR + +H+L SKI +S
Sbjct: 433 KENGGWGDIRDRQLCEINKSPLVRVSSQSASVLHKLLNSKIQFSS 477
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,980,988
Number of Sequences: 27780
Number of extensions: 240606
Number of successful extensions: 597
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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