Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i05r
         (536 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03620.1 68417.m00497 myosin heavy chain-related contains wea...    29   2.6  
At5g01660.1 68418.m00082 kelch repeat-containing protein similar...    27   7.9  
At4g32890.1 68417.m04680 zinc finger (GATA type) family protein ...    27   7.9  

>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
           similarity to Swiss-Prot:P24733 myosin heavy chain,
           striated muscle [Aequipecten irradians]
          Length = 342

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = -1

Query: 173 KQIPSTIAAMTEKQLLCEGRGKEEKVLEFLMSR 75
           K++ +++AA    Q++C   GKE++++   +SR
Sbjct: 164 KELSASMAARKSLQMMCSSLGKEKEIMALELSR 196


>At5g01660.1 68418.m00082 kelch repeat-containing protein similar to
           SP|P57790 Kelch-like ECH-associated protein 1 (Cytosolic
           inhibitor of Nrf2) {Rattus norvegicus}; contains Pfam
           profile PF01344: Kelch motif
          Length = 621

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 157 VDGICFVSIYVPHPSLQIFNEIK 225
           +DG C VS  +PH   Q+ +E+K
Sbjct: 247 IDGSCLVSSPLPHTISQLMHEVK 269


>At4g32890.1 68417.m04680 zinc finger (GATA type) family protein
           GATA transcription factor 3, Arabidopsis thaliana,
           gb:Y13650
          Length = 308

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 88  NSSTFSSFPLPSHSNCFSVIAAIVDGICFVSIYVPHPSLQIFNEIKNFI 234
           +SST S+  L   SN  S+     DG  F  +Y+P+  +     + NF+
Sbjct: 42  DSSTLSTGTLTDSSNSSSLFT---DGTGFSDLYIPNDDIAELEWLSNFV 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,389,188
Number of Sequences: 28952
Number of extensions: 226532
Number of successful extensions: 621
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)