Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12i05f
(574 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 83 3e-16
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 77 1e-14
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 62 5e-10
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 61 9e-10
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 58 6e-09
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 58 8e-09
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 58 8e-09
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 55 6e-08
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 54 2e-07
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 51 1e-06
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 51 1e-06
M38643-2|AAA28940.1| 192|Drosophila melanogaster protein ( D.me... 44 1e-04
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 42 6e-04
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 38 0.007
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 38 0.007
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 38 0.007
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 38 0.010
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 38 0.013
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 37 0.017
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 36 0.051
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 36 0.051
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 36 0.051
AE014296-636|AAF47758.2| 296|Drosophila melanogaster CG12077-PA... 30 2.6
AE014134-3392|AAF53993.2| 241|Drosophila melanogaster CG2042-PA... 29 4.5
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 83.0 bits (196), Expect = 3e-16
Identities = 57/189 (30%), Positives = 85/189 (44%), Gaps = 3/189 (1%)
Frame = -3
Query: 572 PFIFSLSETWLKPDFVFKIP-GYSCLREDRADGYGGVCLLIRNSSTFSSFPLPSHSNCFS 396
P I SL ET ++ P Y L + +GGV LL+ S + + +
Sbjct: 29 PHIISLQETHIQYTNNIPTPINYKLLTNIATNRFGGVRLLVHKSIQHTVLNITIDIEAIA 88
Query: 395 VIAAIVDGICFVSIYVPHPSLQIFNE-IKNFISVLPRPFMILGDFNSHHTSWGSSVSNSY 219
+ + S Y+ P+ I N+ + N ++ P +I GDFN H WGS +N
Sbjct: 89 INIESKLKLNIFSTYIS-PTKNITNQTLHNTFNIQQTPSLITGDFNGWHHPWGSPTTNKR 147
Query: 218 GYELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLSICTPQLASSLSWSTLCSTYNSDH 39
G +D L +LN SPT + + IDL++C+P LA W L + SDH
Sbjct: 148 GKITHRFIDNMHLILLNDKSPTHFS-THNTYTHIDLTLCSPILAPHAKWKILNDLHGSDH 206
Query: 38 YPIIIS-FP 15
+PII + FP
Sbjct: 207 FPIITTLFP 215
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 77.4 bits (182), Expect = 1e-14
Identities = 45/149 (30%), Positives = 77/149 (51%)
Frame = -3
Query: 470 GVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGICFVSIYVPHPSLQIFNEIKNFISVLP 291
G+ +LI+ + + + S C ++ I V+ Y+P + ++I + L
Sbjct: 68 GIGVLIKRNVPHTYRNINSSILCSALQLNFEQVINIVNAYIPPSQIFSSSDISEILQNLN 127
Query: 290 RPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVISAIDL 111
++LGD NS WGS +N+ G ++ ++ SL +LN GSPT L+ + ID+
Sbjct: 128 GSTILLGDLNSWSPLWGSPRTNTRGKKIETVILENSLIVLNDGSPTHLS-THNTFTHIDI 186
Query: 110 SICTPQLASSLSWSTLCSTYNSDHYPIII 24
S+ +PQ+A SWS + + SDH+PI I
Sbjct: 187 SLISPQIAHMCSWSISDNLHGSDHFPITI 215
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 62.1 bits (144), Expect = 5e-10
Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 9/190 (4%)
Frame = -3
Query: 566 IFSLSETWLKPDFVFKIPGYSCLREDRADG--YGGVCLLIRNSSTFSSFP--LPSHSNCF 399
+ LSET L + F+I Y + DG +GG +LIRN + +H
Sbjct: 32 VMLLSETHLTSKYNFQIRDYHFYGTNHPDGKAHGGTAILIRNRMKHHFYKEFAENHLQAT 91
Query: 398 SVIAAIVDG--ICFVSIYVPHPSLQIFNEIKNFISVLPRPFMILGDFNSHHTSWGSSVSN 225
S+ + D + ++Y P + + +F L F+ GD+N+ HT WGS + N
Sbjct: 92 SINIQLDDNTLLTLAAVYCPPRFTVLEAQFLDFFQALGPHFIAAGDYNAKHTHWGSRLVN 151
Query: 224 SYGYELLD--ILDMYSLCILNSGSPTRLTKP-GEVISAIDLSICTPQLASSLSWSTLCST 54
G +L I L ++ GSPT ++ ID ++ T ++ SL +
Sbjct: 152 PKGKQLYKTIIKATNKLDHVSPGSPTYWPSDLNKLPDLIDFAV-TKNISRSLVKAECLPD 210
Query: 53 YNSDHYPIII 24
+SDH P++I
Sbjct: 211 LSSDHSPVLI 220
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 61.3 bits (142), Expect = 9e-10
Identities = 54/202 (26%), Positives = 87/202 (43%), Gaps = 22/202 (10%)
Frame = -3
Query: 557 LSETWLKPDFVFKIPGYSCLREDRADGYGG-VCLLIRNSSTFSSFP-LPSH--------- 411
++ETWL F IP Y+ R DR + GG V + + N+ P + SH
Sbjct: 43 INETWLTHSDRFNIPEYTIYRNDRKESRGGGVAIAVSNTLIHEQIPCIKSHVIENVGIQI 102
Query: 410 ---SNC----FSVIAAIVDGICFVS---IYVPHPSLQ-IFNEIKNFISVLPRPFMILGDF 264
SN +S+ A C S + H L+ ++ IS + F+I GDF
Sbjct: 103 NTDSNSSLKIYSIYFAGNTSKCIPSSCDLSWDHNHLKSLYRSDLLKISQINGNFLICGDF 162
Query: 263 NSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLSICTPQLAS 84
NS H +W + +N +G L ++ D+ IL PT + A L +C + +
Sbjct: 163 NSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQPTYIPH-NHKAKASTLDLCLTNIPN 221
Query: 83 SLSWSTLCSTYNSDHYPIIISF 18
L+ + +SDH P++I +
Sbjct: 222 QLANPAVMQELSSDHLPVVIKY 243
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 58.4 bits (135), Expect = 6e-09
Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 10/192 (5%)
Frame = -3
Query: 566 IFSLSETWLKPDFVFKIPGYSCLREDRADG--YGGVCLLIRNSST---FSSFPLPSHSNC 402
+ LSET L F IPGY + DG +GG +LIRN ++F ++
Sbjct: 32 VMLLSETHLTNKNNFHIPGYLFYGTNHPDGKAHGGTGILIRNRIKHHHLNNFD-KNYLQS 90
Query: 401 FSVIAAIVDG-ICFVSIYVPHPSLQIF-NEIKNFISVLPRPFMILGDFNSHHTSWGSSVS 228
S+ + +G ++Y P P I ++ F + L F+ GD+N+ HT WGS +
Sbjct: 91 TSIALQLNNGSTTLAAVYCP-PRFPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGSRLV 149
Query: 227 NSYGYELLDILDM--YSLCILNSGSPTRL-TKPGEVISAIDLSICTPQLASSLSWSTLCS 57
+ G +L + L L ++ G PT P ++ ID +I T + ++ + +
Sbjct: 150 SPKGKQLYNALTKPENKLDYVSPGKPTYWPADPRKIPDLIDFAI-TKHVPRNMVTAEALA 208
Query: 56 TYNSDHYPIIIS 21
+SDH P+ ++
Sbjct: 209 DLSSDHSPVFLN 220
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 58.0 bits (134), Expect = 8e-09
Identities = 57/193 (29%), Positives = 88/193 (45%), Gaps = 11/193 (5%)
Frame = -3
Query: 566 IFSLSETWLKPDFVFKIPGYSCLREDRA----DGYGGVCLLIRNSSTFSSFPL----PSH 411
I ++E LK KI GY+ R + GGV + +R +T FP H
Sbjct: 32 ILLVTELRLKRGETVKIYGYAYYPAYRPSLNNNSVGGVAVFVR--TTLRHFPQRVIETRH 89
Query: 410 SNCFSV-IAAIVDGICFVSIYVPHPSLQIFNE-IKNFISVLPRPFMILGDFNSHHTSWGS 237
SV +A + + F +IY PS +I + I + +++ GD+N+ H WG
Sbjct: 90 IQLSSVKVATGLGDLQFSAIYCS-PSTRIEERHFTDIIRACGQRYLVGGDWNARHWLWGD 148
Query: 236 SVSNSYGYELLDILDMYSLCILNSGSPTRLT-KPGEVISAIDLSICTPQLASSLSWSTLC 60
+ ++ G EL + L + IL +GSPTR P S ID ++ + L+ T
Sbjct: 149 TCNSPRGRELAEALSVTGAKILATGSPTRYPYVPSHTPSCIDFAV-YHGIPDHLATITQS 207
Query: 59 STYNSDHYPIIIS 21
+SDH P+IIS
Sbjct: 208 WDLDSDHLPLIIS 220
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 58.0 bits (134), Expect = 8e-09
Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 10/192 (5%)
Frame = -3
Query: 566 IFSLSETWLKPDFVFKIPGYSCLREDRADG--YGGVCLLIRNSST---FSSFPLPSHSNC 402
+ LSET L F IPGY + DG +GG +LIRN ++F ++
Sbjct: 32 VMLLSETHLTNKNNFHIPGYLFYGTNHPDGKAHGGTGILIRNRIKHHHLNNFD-KNYLQS 90
Query: 401 FSVIAAIVDG-ICFVSIYVPHPSLQIF-NEIKNFISVLPRPFMILGDFNSHHTSWGSSVS 228
S+ + +G ++Y P P I ++ F + L F+ GD+N+ HT WGS +
Sbjct: 91 TSIALQLNNGSTTLAAVYCP-PRFPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGSRLV 149
Query: 227 NSYGYELLDILDM--YSLCILNSGSPTRL-TKPGEVISAIDLSICTPQLASSLSWSTLCS 57
G +L + L L ++ G PT P ++ ID +I T + ++ + +
Sbjct: 150 TPKGKQLYNALTKPENKLDYVSPGKPTYWPADPRKIPDLIDFAI-TKHVPRNMVTAEALA 208
Query: 56 TYNSDHYPIIIS 21
+SDH P+ ++
Sbjct: 209 DLSSDHSPVFLN 220
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 55.2 bits (127), Expect = 6e-08
Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 9/191 (4%)
Frame = -3
Query: 566 IFSLSETWLKPDFVFKIPGYSCLREDRADG---YGGVCLLIRNSSTFSSFPLPSHSNCF- 399
+ LSET K K+ G+ + G GG +LI+NS + FPL +
Sbjct: 32 VLLLSETHCKGAETPKLFGFVAYTANDPSGGNAKGGAAILIKNS--LAHFPLTPIATAKV 89
Query: 398 ----SVIAAIVDGICFVSIYVPHPSLQIFNEIKNFISVLPRPFMILGDFNSHHTSWGSSV 231
+VI + I F ++Y P +E K+ + F++ GD+N+ H WG+
Sbjct: 90 QLAPAVIETALGPISFGAVYCPPRFAWTTDEFKDILEEFQTKFIVAGDWNASHWLWGAGR 149
Query: 230 SNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVISA-IDLSICTPQLASSLSWSTLCST 54
SN G L +++ + L +G PTR ID ++ L + S +
Sbjct: 150 SNQRGIALANLVLNSEVDSLATGGPTRYPYGCRGSPGYIDFALTKGVLGIHANISAVVE- 208
Query: 53 YNSDHYPIIIS 21
+SDH P++I+
Sbjct: 209 LSSDHLPLVIT 219
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 53.6 bits (123), Expect = 2e-07
Identities = 28/96 (29%), Positives = 47/96 (48%)
Frame = -3
Query: 305 ISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVI 126
IS + F+I GDFNS H +W + +N +G L ++ D+ IL PT +
Sbjct: 97 ISQINGNFLICGDFNSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQPTYIPH-NHKA 155
Query: 125 SAIDLSICTPQLASSLSWSTLCSTYNSDHYPIIISF 18
A L +C + + L+ + +SDH P++I +
Sbjct: 156 KASTLDLCLTNIPNQLANPAVMQELSSDHLPVVIKY 191
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 51.2 bits (117), Expect = 1e-06
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 6/182 (3%)
Frame = -3
Query: 554 SETWLKPDFVFKIPGYSCLREDRADGY--GGVCLLIRNSSTFSSF-PLPSHSNCFSVI-- 390
+ET ++ +PGY G GG ++I++ S P+ ++ + +
Sbjct: 38 TETHMRVGQRIYLPGYLMYHAHHPSGNSRGGSAVIIKSRLCHSPLTPISTNDRQIARVHL 97
Query: 389 AAIVDGICFVSIYVPHPSLQIFNEIKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYE 210
V + ++Y+P I ++ K+ + L F+ GD+N+ H WG+ S G
Sbjct: 98 QTSVGTVTVAAVYLPPAERWIVDDFKSMFAALGNKFIAGGDYNAKHAWWGNPRSCPRGKM 157
Query: 209 LLDILDMYSLCILNSGSPTRLT-KPGEVISAIDLSICTPQLASSLSWSTLCSTYNSDHYP 33
L +++ +L +G PT + P SA+D I L TL +SDH P
Sbjct: 158 LQEVIAHGQYQVLATGEPTFYSYNPLLTPSALDFFITCGYGMGRLDVQTL-QELSSDHLP 216
Query: 32 II 27
I+
Sbjct: 217 IL 218
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 50.8 bits (116), Expect = 1e-06
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Frame = -3
Query: 386 AIVDGICFVSIYVP-HPSLQIFNE-IKNFISVLP--RPFMILGDFNSHHTSWGSSVSNSY 219
A + GI F S Y P S + F + ++ ++ RP +I GD N+ T WGS +SN+
Sbjct: 82 AKIRGIHFYSCYAPPSDSPEQFEDMLEKLVNHASGRRPTVIGGDLNAWATEWGSRISNTR 141
Query: 218 GYELLDILDMYSLCILNSG-SPTRLTKPGEVISAIDLSICTPQLASSLSWSTLCSTYNSD 42
G ++D +++ L +LN G PT G S ID++ + L + +W SD
Sbjct: 142 GRAVIDAMNLLDLVLLNDGFKPTFNNDRG--TSFIDVTFVSRVLVAGSNWMVHEDITLSD 199
Query: 41 H 39
H
Sbjct: 200 H 200
>M38643-2|AAA28940.1| 192|Drosophila melanogaster protein (
D.melanogaster mobileelement jockey gag-specific protein
gene, complete cds.).
Length = 192
Score = 44.0 bits (99), Expect = 1e-04
Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 5/139 (3%)
Frame = -3
Query: 554 SETWLKPDFVFKIPGYSCLREDRADGY--GGVCLLIRNSSTFSSF-PLPSHSNCFSVI-- 390
+ET ++ +PGY G GG ++I++ S P+ ++ + +
Sbjct: 38 TETHMRVGQRIYLPGYLMYHAHHPSGNSRGGSAVIIKSRLCHSPLTPISTNDRQIARVHL 97
Query: 389 AAIVDGICFVSIYVPHPSLQIFNEIKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYE 210
V + ++Y+P I ++ K+ + L F+ GD+N+ H WG+ S G
Sbjct: 98 QTSVGTVTVAAVYLPPAERWIVDDFKSMFAALGNKFIAGGDYNAKHAWWGNPRSCPRGKM 157
Query: 209 LLDILDMYSLCILNSGSPT 153
L +++ +L +G PT
Sbjct: 158 LQEVIAHGQYQVLATGEPT 176
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 41.9 bits (94), Expect = 6e-04
Identities = 50/188 (26%), Positives = 77/188 (40%), Gaps = 18/188 (9%)
Frame = -3
Query: 521 KIPGY-SCLREDRADGYGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIV--------DGI 369
++PGY + L ++ A G I NSS P C ++ + I
Sbjct: 66 ELPGYFTYLAQNPASSKRGGVATIVNSSLRHMALEPIEKECIQSAPIVLLPENNRRSEMI 125
Query: 368 CFVSIYVPHPSLQI----FNEIKNFISVL---PRPFMILGDFNSHHTSWGSSVSNSYGYE 210
S+Y P PSL F ++ NF ++ GD+N+ H WG + G
Sbjct: 126 VIASVYCP-PSLSWSPHHFTDVLNFAEKTMGGQTKLILCGDWNAKHRQWGCIRACQRGAA 184
Query: 209 LLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLSICTPQLASSLSWSTLCSTYNSDHY 36
L D + S+ I+ +GS T + SAID SIC +L + + +SDH
Sbjct: 185 LYDAIQADSMAEIVATGSATHFPHDTRKSPSAIDFSIC-KRLGRYEKRISSSAHLSSDHL 243
Query: 35 PIIISFPL 12
PI++ L
Sbjct: 244 PILLEINL 251
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 38.3 bits (85), Expect = 0.007
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 11/131 (8%)
Frame = -3
Query: 371 ICFVSIYVPHPSLQI----FNEIKNFISVL---PRPFMILGDFNSHHTSWGSSVSNSYGY 213
I S+Y P PSL F ++ NF F++ GD+N+ H WG + + G
Sbjct: 113 IVIASVYCP-PSLSWSPHHFTDVLNFAEKTLGGQTKFILCGDWNAKHRQWGCTRACQRGT 171
Query: 212 ELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLSIC--TPQLASSLSWSTLCSTYNS 45
L + + + I+ +G T + SAID SIC +L +S S + +S
Sbjct: 172 ALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSICKGLGRLEKRISSS---ADLSS 228
Query: 44 DHYPIIISFPL 12
DH PI++ L
Sbjct: 229 DHLPILLEINL 239
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 38.3 bits (85), Expect = 0.007
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 11/131 (8%)
Frame = -3
Query: 371 ICFVSIYVPHPSLQI----FNEIKNFISVL---PRPFMILGDFNSHHTSWGSSVSNSYGY 213
I S+Y P PSL F ++ NF F++ GD+N+ H WG + + G
Sbjct: 75 IVIASVYCP-PSLSWSPHHFTDVLNFAEKTLGGQTKFILCGDWNAKHRQWGCTRACQRGT 133
Query: 212 ELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLSIC--TPQLASSLSWSTLCSTYNS 45
L + + + I+ +G T + SAID SIC +L +S S + +S
Sbjct: 134 ALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSICKGLGRLEKRISSS---ADLSS 190
Query: 44 DHYPIIISFPL 12
DH PI++ L
Sbjct: 191 DHLPILLEINL 201
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 38.3 bits (85), Expect = 0.007
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 11/131 (8%)
Frame = -3
Query: 371 ICFVSIYVPHPSLQI----FNEIKNFISVL---PRPFMILGDFNSHHTSWGSSVSNSYGY 213
I S+Y P PSL F ++ NF F++ GD+N+ H WG + + G
Sbjct: 113 IVIASVYCP-PSLSWSPHHFTDVLNFAEKTLGGQTKFILCGDWNAKHRQWGCTRACQRGT 171
Query: 212 ELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLSIC--TPQLASSLSWSTLCSTYNS 45
L + + + I+ +G T + SAID SIC +L +S S + +S
Sbjct: 172 ALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSICKGLGRLEKRISSS---ADLSS 228
Query: 44 DHYPIIISFPL 12
DH PI++ L
Sbjct: 229 DHLPILLEINL 239
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 37.9 bits (84), Expect = 0.010
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 9/129 (6%)
Frame = -3
Query: 371 ICFVSIYVPHPSLQI----FNEIKNFISVL---PRPFMILGDFNSHHTSWGSSVSNSYGY 213
I S+Y P PSL+ F ++ NF F++ GD+N+ H WG + + G
Sbjct: 113 IVIASVYCP-PSLRWLPHHFTDVLNFAEKTLGGQTKFILCGDWNAKHRQWGCTRACQRGT 171
Query: 212 ELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLSICTPQLASSLSWSTLCSTYNSDH 39
L + + S I+ +G T + SAID SIC L + + +SDH
Sbjct: 172 ALYEAVQADSTAEIIATGCATHFPHDTRKNPSAIDFSIC-KGLGRFEKRISSGADLSSDH 230
Query: 38 YPIIISFPL 12
PI++ L
Sbjct: 231 LPILLEINL 239
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 37.5 bits (83), Expect = 0.013
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Frame = -3
Query: 371 ICFVSIYVPHPSLQI----FNEIKNFISVL---PRPFMILGDFNSHHTSWGSSVSNSYGY 213
I S+Y P PSL F ++ NF F++ GD+N+ H WG + + G
Sbjct: 113 IVIASVYCP-PSLSWSPHHFTDVLNFAEKTLGGQTKFILCGDWNAKHRQWGCTRACQRGT 171
Query: 212 ELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLSICTPQLASSLSWSTLCSTYNSDH 39
L + + + I+ +G T + SAID SIC L + + +SDH
Sbjct: 172 ALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC-KGLGRLEKRISSVADLSSDH 230
Query: 38 YPIIISFPL 12
PI++ L
Sbjct: 231 LPILLEINL 239
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 37.1 bits (82), Expect = 0.017
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Frame = -3
Query: 359 SIYVPHPSLQI----FNEIKNFISVL---PRPFMILGDFNSHHTSWGSSVSNSYGYELLD 201
S+Y P PSL F ++ NF F++ GD+N+ H WG + + G L +
Sbjct: 1 SVYCP-PSLSWSPHHFTDVLNFAEKTLGGQTKFILCGDWNAKHRQWGCTRACQRGTALYE 59
Query: 200 ILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLSIC--TPQLASSLSWSTLCSTYNSDHYP 33
+ + I+ +G T + SAID SIC +L +S S + +SDH P
Sbjct: 60 AVQADPMAEIIATGCATHFPHDTRKNPSAIDFSICKGLGRLEKRISSS---ADLSSDHLP 116
Query: 32 IIISFPL 12
I++ L
Sbjct: 117 ILLEINL 123
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 35.5 bits (78), Expect = 0.051
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Frame = -3
Query: 332 QIFNEIKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYEL-LDILDMYSLCILNSGSP 156
++FN + + + F++ GD+N H WG+ +S + G L IL L I+ +G
Sbjct: 137 KLFNHFEMLLDGKSK-FILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHA 195
Query: 155 TRLT-KPGEVISAIDLSICTPQLASSL-SWSTLCSTYNSDHYPIII 24
T + SA+D +IC L ++ST +SDH PI I
Sbjct: 196 THFPFDKKKQPSALDFAICKGFHTQKLKTYST--DELSSDHLPIQI 239
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 35.5 bits (78), Expect = 0.051
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Frame = -3
Query: 332 QIFNEIKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYEL-LDILDMYSLCILNSGSP 156
++FN + + + F++ GD+N H WG+ +S + G L IL L I+ +G
Sbjct: 137 KLFNHFEMLLDGKSK-FILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHA 195
Query: 155 TRLT-KPGEVISAIDLSICTPQLASSL-SWSTLCSTYNSDHYPIII 24
T + SA+D +IC L ++ST +SDH PI I
Sbjct: 196 THFPFDKKKQPSALDFAICKGFHTQKLKTYST--DELSSDHLPIQI 239
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 35.5 bits (78), Expect = 0.051
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Frame = -3
Query: 332 QIFNEIKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYEL-LDILDMYSLCILNSGSP 156
++FN + + + F++ GD+N H WG+ +S + G L IL L I+ +G
Sbjct: 137 KLFNHFEMLLDGKSK-FILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHA 195
Query: 155 TRLT-KPGEVISAIDLSICTPQLASSL-SWSTLCSTYNSDHYPIII 24
T + SA+D +IC L ++ST +SDH PI I
Sbjct: 196 THFPFDKKKQPSALDFAICKGFHTQKLKTYST--DELSSDHLPIQI 239
>AE014296-636|AAF47758.2| 296|Drosophila melanogaster CG12077-PA
protein.
Length = 296
Score = 29.9 bits (64), Expect = 2.6
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
Frame = -3
Query: 512 GYSCLREDRADGYGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGICFVSIY-VPHPS 336
G CL Y LL+ + F +P+ + +N + + IC +++Y + P
Sbjct: 187 GAICLASRLPTSYHAFVLLVEAAVFFVLYPIMTEANWHAGFMLPIFAICCMALYCISRPV 246
Query: 335 LQIFNEIKNFIS-VLPRPFMILGDFNSH-HTSWGSSVSNSYGYELLD 201
L ++ FI+ V P F+ + + H W ++ E LD
Sbjct: 247 LYLYASTTIFINFVCPFIFVWQQQYKFNIHGPWDEAIVEENTEENLD 293
>AE014134-3392|AAF53993.2| 241|Drosophila melanogaster CG2042-PA
protein.
Length = 241
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -3
Query: 272 GDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVIS 123
GD+N+ H WG+ N G L +++ + L +G P R + + ++
Sbjct: 57 GDWNTSHWLWGAERCNRRGRALANLVLSTGMSSLVTGGPKRFQEAVDTLT 106
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,868,078
Number of Sequences: 53049
Number of extensions: 504343
Number of successful extensions: 1101
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2255362491
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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