BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12i05f (574 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 56 2e-08 U80028-2|AAN73869.1| 351|Caenorhabditis elegans Serpentine rece... 31 0.44 U50312-3|AAA92320.2| 494|Caenorhabditis elegans Hypothetical pr... 29 2.3 AF067950-4|AAG24157.1| 351|Caenorhabditis elegans Serpentine re... 28 5.4 AF022981-10|AAG24203.1| 360|Caenorhabditis elegans Serpentine r... 27 7.2 Z81458-3|CAB03823.2| 487|Caenorhabditis elegans Hypothetical pr... 27 9.5 Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical pr... 27 9.5 Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical pr... 27 9.5 AF251126-1|AAF71273.1| 487|Caenorhabditis elegans UDP-GlcNAc:a-... 27 9.5 >AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical protein R11E3.3 protein. Length = 931 Score = 56.0 bits (129), Expect = 2e-08 Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Frame = -3 Query: 281 MILGDFNSHHTSWGSSVS-NSYGYELLDILDMY-SLCILNSGSPTRLTKPGEVISAIDLS 108 +I GD N+HH++W S S ++ G EL +++D++ L I N TR IS+ D++ Sbjct: 35 IISGDVNAHHSAWHSEGSEDTRGRELAELIDLHPDLIIQNEQVHTRADTYS--ISSPDIT 92 Query: 107 ICTPQLASSLSWSTLCSTYNSDHYPI 30 ICT LA+ WSTL SDH P+ Sbjct: 93 ICTADLATKCHWSTLYK-LGSDHIPM 117 >U80028-2|AAN73869.1| 351|Caenorhabditis elegans Serpentine receptor, class h protein88 protein. Length = 351 Score = 31.5 bits (68), Expect = 0.44 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%) Frame = -3 Query: 476 YGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGI--CFVSIYVPHPSLQIFN-EIKNF 306 +GG C+L ++ SS+ +P + F V + D C V+ Y+ P+L F+ + NF Sbjct: 45 FGGYCILYKSPKEMSSYRVPLFN--FHVWTCLADVFLNCLVTPYIFLPTLTGFSVGLLNF 102 Query: 305 ISVLPR 288 + V P+ Sbjct: 103 LGVPPK 108 >U50312-3|AAA92320.2| 494|Caenorhabditis elegans Hypothetical protein B0222.3 protein. Length = 494 Score = 29.1 bits (62), Expect = 2.3 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = -3 Query: 404 CFSVIAAIVDGICFVSIY--VPHPSLQIFNEIKNFISVLPRPFMILGDFNSHHTSWGSS 234 C I+ ++ GI IY V H L+ N +KN + LP + + FN+ W S Sbjct: 166 CSWFISPVLSGIISSIIYMIVDHTVLRTANPLKNGLRALPVFYFVCMAFNALMVFWDGS 224 >AF067950-4|AAG24157.1| 351|Caenorhabditis elegans Serpentine receptor, class h protein87 protein. Length = 351 Score = 27.9 bits (59), Expect = 5.4 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Frame = -3 Query: 476 YGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGI--CFVSIYVPHPSLQIFN-EIKNF 306 +GG C+L ++ S++ +P + F V + D C + Y+ P+L F+ + NF Sbjct: 45 FGGYCILYKSPKEMSTYRIPLFN--FHVWTCLADVFLNCLGTPYIFLPTLTGFSVGLLNF 102 Query: 305 ISVLPR 288 + V P+ Sbjct: 103 LGVPPK 108 >AF022981-10|AAG24203.1| 360|Caenorhabditis elegans Serpentine receptor, class h protein82 protein. Length = 360 Score = 27.5 bits (58), Expect = 7.2 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Frame = -3 Query: 476 YGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGICFVSIYVPHPSLQIFN-EIKNFIS 300 +GG C+L +++S S+ LP + F + + Y PSL F+ NF+ Sbjct: 45 FGGYCILFKSTSQMGSYRLPLFNFHFWTCLVDIMINALATPYFFFPSLAGFSVGFLNFLG 104 Query: 299 VLP 291 V P Sbjct: 105 VPP 107 >Z81458-3|CAB03823.2| 487|Caenorhabditis elegans Hypothetical protein C03E10.4 protein. Length = 487 Score = 27.1 bits (57), Expect = 9.5 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = +1 Query: 79 REDANWGVQMDRSMALITSPGFVRRVGEPEFKMHRLYMSKISNNS 213 +E+ WG DR + I VR + +H+L SKI +S Sbjct: 433 KENGGWGDIRDRQLCEINKSPLVRVSSQSASVLHKLLNSKIQFSS 477 >Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical protein T06D8.10 protein. Length = 1490 Score = 27.1 bits (57), Expect = 9.5 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = -3 Query: 446 SSTFSSFPLPSHSNCFSVIAAIVDGIC 366 SST S+ P+P+ +CF+ GIC Sbjct: 141 SSTISNCPIPTIDHCFATNYRSFSGIC 167 >Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical protein T06D8.10 protein. Length = 1490 Score = 27.1 bits (57), Expect = 9.5 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = -3 Query: 446 SSTFSSFPLPSHSNCFSVIAAIVDGIC 366 SST S+ P+P+ +CF+ GIC Sbjct: 141 SSTISNCPIPTIDHCFATNYRSFSGIC 167 >AF251126-1|AAF71273.1| 487|Caenorhabditis elegans UDP-GlcNAc:a-6-D-mannoside b1,2-N-acetylglucosaminyltransferase II protein. Length = 487 Score = 27.1 bits (57), Expect = 9.5 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = +1 Query: 79 REDANWGVQMDRSMALITSPGFVRRVGEPEFKMHRLYMSKISNNS 213 +E+ WG DR + I VR + +H+L SKI +S Sbjct: 433 KENGGWGDIRDRQLCEINKSPLVRVSSQSASVLHKLLNSKIQFSS 477 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,800,748 Number of Sequences: 27780 Number of extensions: 260479 Number of successful extensions: 617 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 605 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 616 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1184216096 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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