Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i04r
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   7.2  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   9.5  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   9.5  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    25   9.5  

>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
 Frame = -2

Query: 229  RHFYWS---NPILL*RFY-----CHFYSFVEIYYQSDLTIYKKCS*WLSI-LRIFDSLII 77
            RHFY+    +  LL  FY      +F  F++ + +S  TIY+    WL I ++  + L +
Sbjct: 1400 RHFYYGATYSRYLLSLFYKTNDKVNFLQFLKRFRRSSSTIYEHRQIWLDIMIKYLEDLRL 1459

Query: 76   QY 71
            Q+
Sbjct: 1460 QH 1461


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 261 GIYILKQLYLFW*VNKNNIRHNEKNSKDYSLRCYLL-LDTTNNN 389
           G Y+   +YL + VNK ++ ++E+ S    L+  L+ L T  NN
Sbjct: 505 GTYLAPIIYLSFGVNKLSVWNSERISHTLELQDILVKLSTPKNN 548


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 468 LLFTF*LVPILYSINNEQID-KM*ILLC-CYWL 376
           +LF     PILY  NN  I   + + +C C+WL
Sbjct: 251 ILFQIIFTPILYKTNNNPIILPITVTVCSCWWL 283


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 233 FSLTLRIFVRNLY 271
           F LTL+++VRNLY
Sbjct: 337 FELTLQVYVRNLY 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,407,180
Number of Sequences: 5004
Number of extensions: 45958
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)