Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i04r
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8553| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_41955| Best HMM Match : RVT_1 (HMM E-Value=5.3e-15)                 29   3.3  
SB_34263| Best HMM Match : MORN (HMM E-Value=0.067)                    29   4.3  
SB_58952| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  

>SB_8553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 982

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 113 VIDFENLRQSDHTISSIVVLVELSIIGYVVFVFICYG 3
           +I+    R    T   ++++V +S+I  V+F+FI YG
Sbjct: 381 MIEATRPRNDGVTKKIVIIVVVVSVIALVIFIFIAYG 417


>SB_41955| Best HMM Match : RVT_1 (HMM E-Value=5.3e-15)
          Length = 962

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = -1

Query: 575 SCLHVLLLRSRICLNFKRHPMSERLL*ITRKICLSN 468
           +CLH  L+R RI L  + +  S+RLL  T+K+ L++
Sbjct: 387 TCLHDSLIRDRIVLGIRDNDTSKRLL-QTKKLSLAH 421


>SB_34263| Best HMM Match : MORN (HMM E-Value=0.067)
          Length = 757

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 452 NWFLFFIL*IMNKLIRCKFCCVVIGCV 372
           NWFLF I  + ++L   KF  +++ C+
Sbjct: 507 NWFLFVIESVRDRLFTTKFTTIILECL 533


>SB_58952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 145 RFDNKFQQNYKNGSRSVITKSGLTNKNGGFFIDV 246
           +++  +   Y++G   ++ KS L+N    FF+DV
Sbjct: 187 KYNASYNLEYRHGPVELVNKSILSNSRTAFFVDV 220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,532,923
Number of Sequences: 59808
Number of extensions: 290837
Number of successful extensions: 498
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)