Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i04f
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.07 |tom20||mitochondrial TOM complex subunit Tom20|Schi...    42   8e-05
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    28   0.82 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   1.4  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    27   1.9  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           26   4.4  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    25   7.7  

>SPAC6F12.07 |tom20||mitochondrial TOM complex subunit
           Tom20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 41.5 bits (93), Expect = 8e-05
 Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 17/130 (13%)
 Frame = +2

Query: 155 IAGTLFLGYCVYFDQQRRKDPLFKKKLRERRLNAQQNASRSRTLGGPVPDMNDHEAMQ-- 328
           +  T  +GY +YFD +RR DP F+K L+ R     +   +   L     D+   EA+Q  
Sbjct: 10  LLATAAVGYAIYFDYKRRNDPHFRKTLKRRYKKVHEAKKQEEKLATKKFDITVEEALQVV 69

Query: 329 -------------RFFLQQIQ--XXXXXXXXXXXXXXVEHLGQAVAVCGQTEQLLSVLQQ 463
                         FF+QQ+                       A+ V  Q  +L ++ ++
Sbjct: 70  ASTPVPSSAEEKELFFMQQVARGEQLFQQQPDNIKESAACFYSALKVYPQPVELFAIYER 129

Query: 464 TMPAPIFHLL 493
           T+P PI +LL
Sbjct: 130 TVPEPIMNLL 139


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 200 QRRKDPLFKKKLRERRLNAQQNASRSRTLGGPVPDM--NDHEAMQRFFLQQIQ 352
           Q R+  L   K++  R+N+Q NA  +  LG P PD   N     Q+ F QQ Q
Sbjct: 406 QHRQQQL--NKIQNARMNSQ-NAPNTNKLGNPQPDNTGNPQAFSQQAFAQQQQ 455


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 137 LGIAVGIAGTLFLGYCVYF-DQQRRKDP 217
           LG+ +G+  ++F GYC  F D++  K P
Sbjct: 319 LGLIMGVFNSVFAGYCTIFCDEEVLKTP 346


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 499 LKKQMEDW-SWHSLLKYTKQLFSLSTNSHSL 410
           L+   ++W +W   ++Y K L  +S N HS+
Sbjct: 126 LRDPNDEWKAWQKRMRYKKNLTKISKNHHSI 156


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +3

Query: 309 TIMKLCR--DFSCNRFNSAKSCW 371
           T+ K+C+  + SC RFN  K  W
Sbjct: 84  TVQKVCKKLNISCRRFNFEKEYW 106


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 21/60 (35%), Positives = 31/60 (51%)
 Frame = -1

Query: 454 YTKQLFSLSTNSHSLPEMFDSSFKITCSQQLFAELNLLQEKSLHSFMIVHVWNRSTEGTR 275
           +T QL  L T   S+PE+ +   K + S +LF  +  L++ S+    I H  NRS E  R
Sbjct: 67  FTLQLGDLITEHTSVPELNEILDKFSQSNELFT-MRFLEKASI----IAHK-NRSAELAR 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,469
Number of Sequences: 5004
Number of extensions: 43676
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)