Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i04f
         (565 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49910.1 68418.m06180 heat shock protein 70 / HSP70 (HSC70-7)...    29   1.6  
At4g09640.1 68417.m01584 expressed protein several hypothetical ...    29   2.8  
At5g67200.1 68418.m08471 leucine-rich repeat transmembrane prote...    28   5.0  
At1g27460.1 68414.m03348 calmodulin-binding protein similar to c...    27   6.5  

>At5g49910.1 68418.m06180 heat shock protein 70 / HSP70 (HSC70-7)
           identical to heat shock protein 70 [Arabidopsis
           thaliana] GI:6746592
          Length = 718

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 395 VEHLGQAVAVCGQTEQLLSVLQQTMPAPIFHLLLKKLPEVSERLRS 532
           ++   QA +V  QTE+ L  L + +P P+   +  KL E+ E++ S
Sbjct: 604 IDTKNQADSVVYQTEKQLKELGEKIPGPVKEKVEAKLQELKEKIAS 649


>At4g09640.1 68417.m01584 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 386

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -3

Query: 437 QSVHKQPQPARDVRLQLQDHLQPATLRRVESVAR 336
           Q   K P+PAR  + QL+D L+   LRR ES  R
Sbjct: 353 QESAKSPRPARQNK-QLEDDLEAVPLRRQESSLR 385


>At5g67200.1 68418.m08471 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 669

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
 Frame = +2

Query: 101 TNKKMMEITRTTLGIAVGIAGTLFLGYC-VYFD---QQRRKDPLFKKKLR-ERRLNAQQN 265
           T KK  E +   LG   G+A  + LG C V F    ++R  D +++   + E  L+ QQ 
Sbjct: 274 TKKKGKE-SGLVLGFTAGLASLIVLGLCLVVFSLVIKKRNDDGIYEPNPKGEASLSQQQQ 332

Query: 266 ASRSRTLGGPVPDMN-DHEAMQR 331
           +         VP +N D E+ +R
Sbjct: 333 SQNQTPRTRAVPVLNSDTESQKR 355


>At1g27460.1 68414.m03348 calmodulin-binding protein similar to
           calmodulin-binding protein MPCBP [Zea mays] GI:10086260;
           contains Pfam profile PF00515: TPR Domain
          Length = 694

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 395 VEHLGQAVAVCGQTEQLLSVLQQTMP 472
           ++HL  A+++ GQ E L + L+QT+P
Sbjct: 276 MDHLTYALSMTGQFEVLANYLEQTLP 301


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,905,059
Number of Sequences: 28952
Number of extensions: 226680
Number of successful extensions: 662
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)