Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i03r
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identic...    28   4.9  
At5g50700.1 68418.m06282 short-chain dehydrogenase/reductase (SD...    27   8.6  
At5g50600.1 68418.m06268 short-chain dehydrogenase/reductase (SD...    27   8.6  

>At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identical
           to receptor kinase (CLV1) GB:AAB58929 GI:2160756
           [Arabidopsis thaliana]
          Length = 980

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 653 GRLPEDRILWSDRNRIRAHVPRE 585
           G  P  + L+ DRNR R ++PRE
Sbjct: 477 GNFPNLQTLFLDRNRFRGNIPRE 499


>At5g50700.1 68418.m06282 short-chain dehydrogenase/reductase (SDR)
           family protein contains oxidoreductase, short chain
           dehydrogenase/reductase family domain, Pfam:PF00106
          Length = 349

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 541 IESVISSCNVCNPSFFFYQKCLFL-SLFFFMIDQHNFVTIINNNKKLYQK 395
           +E +    N+  P F F+  C FL   +FF   Q  F TI + N  LY K
Sbjct: 1   MELINDFLNLTAPFFTFFGLCFFLPPFYFFKFLQSIFSTIFSEN--LYGK 48


>At5g50600.1 68418.m06268 short-chain dehydrogenase/reductase (SDR)
           family protein similar to sterol-binding dehydrogenase
           steroleosin GI:15824408 from [Sesamum indicum]
          Length = 349

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 541 IESVISSCNVCNPSFFFYQKCLFL-SLFFFMIDQHNFVTIINNNKKLYQK 395
           +E +    N+  P F F+  C FL   +FF   Q  F TI + N  LY K
Sbjct: 1   MELINDFLNLTAPFFTFFGLCFFLPPFYFFKFLQSIFSTIFSEN--LYGK 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,865,457
Number of Sequences: 28952
Number of extensions: 237425
Number of successful extensions: 407
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)