Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i03f
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036692-5|AAS47681.1|  319|Caenorhabditis elegans Serpentine re...    30   1.1  
AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine r...    29   2.5  
U50308-5|AAG24033.2|  284|Caenorhabditis elegans Seven tm recept...    29   3.3  
U23175-3|AAC46712.2|  959|Caenorhabditis elegans Anion/bicarbona...    28   4.4  
U23175-2|AAM98009.1|  797|Caenorhabditis elegans Anion/bicarbona...    28   4.4  
U23175-1|AAZ91355.1|  826|Caenorhabditis elegans Anion/bicarbona...    28   4.4  
AY887905-1|AAX34417.1|  959|Caenorhabditis elegans anion transpo...    28   4.4  

>AF036692-5|AAS47681.1|  319|Caenorhabditis elegans Serpentine
           receptor, class x protein13 protein.
          Length = 319

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 225 FFYQKCLFLSLFFFMIDQHNFVTIINNNK-KLYQKCTYSWK 344
           FF Q CL   LFF+ I    +V+ +N N+  ++   T++W+
Sbjct: 241 FFMQSCLQGILFFYEIFNFYYVSTLNTNQWYVFFTATFAWE 281


>AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine
           receptor, class x protein12 protein.
          Length = 305

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 225 FFYQKCLFLSLFFFMIDQHNFVTIINNNK-KLYQKCTYSWK 344
           FF Q CL   LFF+ +    ++  +N N+  ++   T++W+
Sbjct: 223 FFTQSCLQGILFFYEVFNFYYIVTLNTNQWFVFMTSTFAWE 263


>U50308-5|AAG24033.2|  284|Caenorhabditis elegans Seven tm receptor
           protein 94 protein.
          Length = 284

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = -1

Query: 380 VISNV*TEMISLFP*ISTLLIQFFVVVYNGYKIMLINHEKK 258
           +I+N+ +  ++L+P +  L++ +F+  Y  Y +  +N  KK
Sbjct: 226 MIANMTSVCLALYPALDPLVVMYFIKDYRSYLLKKMNISKK 266


>U23175-3|AAC46712.2|  959|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 3, isoform a protein.
          Length = 959

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 216 PSFFFYQKCLFLSL-FFFMIDQHNFVTIINNNKKLYQKCT 332
           PS +F    L  SL F F IDQ+    I+NNN+   +K T
Sbjct: 724 PSGYFVCLLLGFSLSFLFFIDQNITSAIVNNNQNKLKKGT 763


>U23175-2|AAM98009.1|  797|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 3, isoform b protein.
          Length = 797

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 216 PSFFFYQKCLFLSL-FFFMIDQHNFVTIINNNKKLYQKCT 332
           PS +F    L  SL F F IDQ+    I+NNN+   +K T
Sbjct: 562 PSGYFVCLLLGFSLSFLFFIDQNITSAIVNNNQNKLKKGT 601


>U23175-1|AAZ91355.1|  826|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 3, isoform c protein.
          Length = 826

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 216 PSFFFYQKCLFLSL-FFFMIDQHNFVTIINNNKKLYQKCT 332
           PS +F    L  SL F F IDQ+    I+NNN+   +K T
Sbjct: 591 PSGYFVCLLLGFSLSFLFFIDQNITSAIVNNNQNKLKKGT 630


>AY887905-1|AAX34417.1|  959|Caenorhabditis elegans anion
           transporter ABTS-3 protein.
          Length = 959

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 216 PSFFFYQKCLFLSL-FFFMIDQHNFVTIINNNKKLYQKCT 332
           PS +F    L  SL F F IDQ+    I+NNN+   +K T
Sbjct: 724 PSGYFVCLLLGFSLSFLFFIDQNITSAIVNNNQNKLKKGT 763


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,770,234
Number of Sequences: 27780
Number of extensions: 253588
Number of successful extensions: 613
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)