Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12h24r
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   3.8  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    25   6.7  
SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces...    25   8.8  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    25   8.8  

>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 499 PCRLQNSEQKNINYEGAIFTVSGYGRTDDPWNGGV 395
           PC +   E  N+++E  IF VSG  R     NGG+
Sbjct: 448 PCFVNGVESINVDFEARIFDVSG-DRLVLAGNGGL 481


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -1

Query: 196 GVVSFGHRDGCNSPHPSAYVRPGHYHDWFYEVTGINFD-WSSEDLKPIVLAEAQDDVI 26
           GVV    + GC          PG YHD  Y+  G +    S +D+ P   + ++ D++
Sbjct: 556 GVVKGCKQAGCALVGGETSEMPGLYHDGHYDANGTSVGAVSRDDILPKPESFSKGDIL 613


>SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 155

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 478 EQKNINYEGAIFTVSGYGRTDDPWNGGVAS 389
           + K   ++  + T +G+  +D P++GGV S
Sbjct: 96  QAKKDQFKATLMTRTGHSISDPPYDGGVIS 125


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 175 RDGCNSPHPSAYVRPGHYHDWFY 107
           RDG ++P  S  V+P H H+  Y
Sbjct: 172 RDGLSAPSNSVQVKPKHEHNVDY 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,398,299
Number of Sequences: 5004
Number of extensions: 47694
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)