Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12h24r
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1436 - 26543846-26546806                                         32   0.32 
10_08_1024 + 22371260-22371481,22371514-22372188,22372291-223732...    29   2.3  
04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061     29   2.3  
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28...    29   3.9  
07_01_0755 - 5806614-5806939,5807039-5809415                           28   6.9  

>07_03_1436 - 26543846-26546806
          Length = 986

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
 Frame = -1

Query: 358 ITNEQCLTHYPNSRVIQKQTLC----AAYYNDTAQSSCQGDSGGPLTIVDEDGQPT 203
           I N QC  H+PNS  + K        A  Y  TA+    GD G      DED  PT
Sbjct: 659 IMNSQC-PHHPNSNHVAKDCFVYKQFAEQYAKTARKPSDGDQGTSKKKDDEDDAPT 713


>10_08_1024 +
           22371260-22371481,22371514-22372188,22372291-22373236,
           22389377-22389552
          Length = 672

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
 Frame = -1

Query: 358 ITNEQCLTHYPNSRVIQKQTLC----AAYYNDTAQSSCQGDSGGPLTIVDEDGQPT 203
           I N QC  H+PNS  + K        A  Y   A+    GD G      DED  PT
Sbjct: 443 IMNSQC-PHHPNSNHMAKDCFVYKQFAEQYVKNARKPADGDQGTSKKKDDEDDAPT 497


>04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061
          Length = 875

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
 Frame = -1

Query: 334 HYPNSRVIQKQTLCAAYYNDTAQSSCQGDSGGPLTIVDEDGQPTMVGVVSFGHRDGC--- 164
           H P SR  + ++L ++ Y++         SG  +  +DE G P+    VS   R      
Sbjct: 291 HMPESRHRRDESLISSTYSNGYGGDESSFSGSEVDYIDEGGSPSDSDAVSPMSRHSWDYI 350

Query: 163 ---NSPHPSAYVRPGHYH 119
              NSPH ++     H H
Sbjct: 351 RRHNSPHSASTFSRAHSH 368


>02_01_0041 +
           279583-281622,281724-282047,282315-282443,282526-282648,
           282768-282923,283224-283349,283426-283560,283815-283942,
           284037-284148,284233-284547,284655-284771,284871-285166,
           285252-285783,287980-288082,288808-288881,288965-289062,
           289340-289380,289977-290032,290170-290244,290377-290469,
           290602-290850,290930-291002,291681-291766,291853-291938,
           292067-292142,292280-292347,292430-292496,292570-292665,
           292741-292843,293214-293309,293396-293466
          Length = 2047

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
 Frame = -1

Query: 313 IQKQTLCAAYYNDTAQSSCQGDSGGPLTIVDEDGQPTMVGVVSFGHRDGCNSPHPSAYVR 134
           IQ+Q L A+Y ++  QSS +       TI +E    T  G VS   + G  S +P   V 
Sbjct: 230 IQQQQLAASYMHNPTQSSLE-------TIAEEG---TTTGSVSTWGQGG-TSEYPPNMVF 278

Query: 133 PGHYHDWFYEVTGINFDWSS-EDLKPIVLAEAQDD 32
              Y  W+++       W S E  +  V A A  D
Sbjct: 279 YAEYPGWYFDTN--TQQWQSLESYQQAVTASAVQD 311


>07_01_0755 - 5806614-5806939,5807039-5809415
          Length = 900

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 595 HPRYIEILGGVQTDDIALVKLNHHIPYSRYIQ 500
           HP  +  +G V  +D+AL+ L+HH+P    +Q
Sbjct: 673 HPNLVRPIGYVIYEDVALL-LHHHMPNGTLLQ 703


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,191,429
Number of Sequences: 37544
Number of extensions: 372836
Number of successful extensions: 1127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)