Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12h24r
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    57   2e-10
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.4  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   4.2  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   5.5  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 56.8 bits (131), Expect = 2e-10
 Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 2/169 (1%)
 Frame = -1

Query: 598 IHPRYIEI-LGGVQTDDIALVKLNHHIPYSRYIQPCRLQNSEQKNINYEGAIFTVSGYGR 422
           IHP+Y  I     Q +DIAL+K    I +   + P  L      + ++ G+  TV G+G 
Sbjct: 241 IHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLD-SFAGSDVTVLGWGH 299

Query: 421 TDDPWNGGVASEILLWVHLRGITNEQCLTHYPNSRVIQKQTLCAAYYNDTAQSSCQGDSG 242
           T   +NG + S IL    L  +T  +C  +Y N   I    +CA Y     + +CQ DSG
Sbjct: 300 TS--FNG-MLSHILQKTTLNMLTQVECYKYYGN---IMVNAMCA-YAK--GKDACQMDSG 350

Query: 241 GPLTIVDEDGQPTM-VGVVSFGHRDGCNSPHPSAYVRPGHYHDWFYEVT 98
           GP+   +   +  + +G++S+G   G    +P+   + G Y DW    T
Sbjct: 351 GPVLWQNPRTKRLVNIGIISWGAECG---KYPNGNTKVGSYIDWIVSQT 396


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -1

Query: 439 VSGYGRTDDP----WNGGVASEILLWVHLRGITNEQCLTHYPNSRVIQKQTLC 293
           ++ YG T D     W  G   +++  +HL   T E+  T Y NS+    +  C
Sbjct: 178 MASYGWTTDDLVFLWKEGDPVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYSC 230


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -1

Query: 439 VSGYGRTDDP----WNGGVASEILLWVHLRGITNEQCLTHYPNSRVIQKQTLC 293
           ++ YG T D     W  G   +++  +HL   T E+  T Y NS+    +  C
Sbjct: 178 MASYGWTTDDLVFLWKEGDPVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYSC 230


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -2

Query: 282 TTTPHSPRARETVVVL*PSLMKMDSPPWSV*SASDIET--VATVLIPQRTFGRVTTTTGS 109
           T+ P++ RA      + P   K+D+       AS+ E   +A+V     + G  TT+TG+
Sbjct: 129 TSIPYATRAEIKTESIQPETTKVDTREVQPHDASEKEQLGLASVKAEPGSTGTTTTSTGT 188


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -1

Query: 109 YEVTGINFDWSSEDL 65
           Y + G+NF W  E +
Sbjct: 244 YNIGGLNFQWGEEGI 258


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +1

Query: 196 RPWWAVHLHQRWSKDHH 246
           +P+     H+R+++DHH
Sbjct: 8   KPFECPECHKRFTRDHH 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,801
Number of Sequences: 438
Number of extensions: 3481
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)