Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12h24r
         (622 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44780.1 68418.m05488 expressed protein low similarity to SP|...    29   3.3  
At1g44542.1 68414.m05118 cyclase family protein contains Pfam pr...    29   3.3  
At5g36200.1 68418.m04364 F-box family protein contains Pfam PF00...    28   5.7  
At2g20520.1 68415.m02397 fasciclin-like arabinogalactan-protein ...    28   5.7  
At1g72680.1 68414.m08405 cinnamyl-alcohol dehydrogenase, putativ...    28   5.7  
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro...    27   7.6  

>At5g44780.1 68418.m05488 expressed protein low similarity to
           SP|Q38732 DAG protein, chloroplast precursor
           {Antirrhinum majus}
          Length = 723

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 244 GGPLTIVDEDGQPTMVGVVSFGHRDGCNSPHPSAYVRPGHYHDWFY 107
           G PL    ++GQP+       G   G  +P P   V PG+Y  W +
Sbjct: 462 GTPLPGQGQEGQPSY----QMGFSQGLGAPVPPNQVIPGNYGQWAF 503


>At1g44542.1 68414.m05118 cyclase family protein contains Pfam
           profile: PF04199 putative cyclase
          Length = 271

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
 Frame = -1

Query: 160 SPHPSAYV-RPGHYHDWFYEVTGINFDWSSEDLK----PIVLAEA-QDDVIAAE 17
           S H   +V  PGH+HD +YE     FD  S DL+    P +L +  +D  I+AE
Sbjct: 101 SVHSGTHVDAPGHFHDHYYE---SGFDTDSLDLQILNGPALLVDVPRDKNISAE 151


>At5g36200.1 68418.m04364 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain; similar to unknown protein
           (pir||T00841)
          Length = 471

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -1

Query: 622 LVETTHKFIHPRYIEILGGVQTDDIALVKLNHHIPYSRYIQP--CRLQNSEQKNINYE 455
           ++  T+   H   + +L G   D I LV  N H+  +R+I+P     Q  ++  I YE
Sbjct: 105 ILNNTYIIFHCNGLLLLLGFTDDGIKLVVTNPHLGQTRWIKPRKANYQFCDKYAIGYE 162


>At2g20520.1 68415.m02397 fasciclin-like arabinogalactan-protein
           (FLA6) identical to gi|13377780_gb_AAK20859
          Length = 247

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 177 IETVATVLIPQRTFGRVTTTTGSMR*PASTST 82
           +  V +VL+P+  FG  TT TG+    +STS+
Sbjct: 175 VYVVDSVLLPEELFGTKTTPTGAPAPKSSTSS 206


>At1g72680.1 68414.m08405 cinnamyl-alcohol dehydrogenase, putative
           similar to cinnamyl-alcohol dehydrogenase GB:AAC35846
           [Medicago sativa], SP|Q08350 [Picea abies]
          Length = 355

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -1

Query: 538 KLNHHIPYSRYIQPCRLQN--SEQKNINYEGAIFTVSGYGRTDDPWNGGVASEILL 377
           K+  H+    Y+  CR     +E + +N    +FT +G         GG +S I++
Sbjct: 87  KVGDHVGVGTYVNSCRECEYCNEGQEVNCAKGVFTFNGIDHDGSVTKGGYSSHIVV 142


>At2g25050.1 68415.m02996 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 1111

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 168 PSRCPKLTTPTMVGCPSSSTMVKGPPLSP 254
           P   P L + + +G P+SS ++K PP+ P
Sbjct: 639 PPPPPPLHSNSRMGAPTSSLVLKSPPVPP 667


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,083,536
Number of Sequences: 28952
Number of extensions: 269705
Number of successful extensions: 781
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)