Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12h24f
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    26   3.4  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   3.4  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    25   6.0  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   7.9  

>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 224 DSPDGADHTKADLMRDLSVFCRPTGY 147
           D PDG+D        +   FC+ TGY
Sbjct: 66  DCPDGSDEPGTSACHNGKFFCKNTGY 91


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 468 PCRLQNSEQKNINYEGAIFTVSGYGRTDDPWNGGV 572
           PC +   E  N+++E  IF VSG  R     NGG+
Sbjct: 448 PCFVNGVESINVDFEARIFDVSG-DRLVLAGNGGL 481


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/44 (22%), Positives = 25/44 (56%)
 Frame = -2

Query: 377 RMDELVCGLNQVIRAGQVRQAQTHHEVDAIGEAVGRSQDPFVVN 246
           R++E+   + +V+ + +V      H+V +I    G + DP++++
Sbjct: 244 RLNEIGEAIQEVMESYEVEINGKTHQVKSIRNLCGHNLDPYIIH 287


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 309 RLGLTNLTRPDYLVETTHKFIHPRYIEILGGVQTDDIALVKLNHH 443
           +LG+   TR + +++T   FIH     ++  V  D   L  L  H
Sbjct: 843 KLGIKLCTRNEQIMKTIWSFIHVHDCNVISEVIPDQRFLRTLTEH 887


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,092
Number of Sequences: 5004
Number of extensions: 46244
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)