Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12h24f
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    35   5e-04
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   1.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.7  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   8.7  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   8.7  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 35.1 bits (77), Expect = 5e-04
 Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
 Frame = +3

Query: 243 IIHHEWVLTAAHCL--ANRINFVVRLG-----LTNLTRPDYLVETTHKFIHPRY-IEILG 398
           II   +VLTAAHC+   N     + +G         T    L       IHP+Y I    
Sbjct: 192 IISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKD 251

Query: 399 GVQTDDIALVKLNHHIPYSRYIQPCRLQNSEQKNINYEGAIFTVSGYGRT 548
             Q +DIAL+K    I +   + P  L      + ++ G+  TV G+G T
Sbjct: 252 DWQINDIALLKTEKDIKFGDKVGPACLPFQHFLD-SFAGSDVTVLGWGHT 300


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 202 WSAPSGESAPAAVQSFTTNGS*LRPTASPIASTSW 306
           W+A S E++  A   F T      P + PI  T W
Sbjct: 32  WTATSHEASAPAEGKFKTVSKVPGPFSLPIFGTRW 66


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 212 RRGSQLLRRFNHSPRMGPDCGPLPRQSHQLRGAFGLD 322
           +  + LL   +     GP  GP P Q  ++R A  +D
Sbjct: 367 KENAMLLSGRSQKSTTGPPPGPTPAQKARMR-ALNID 402


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 38  VRDRHFTGHDCY 3
           +++RH T H CY
Sbjct: 99  LKERHITLHHCY 110


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 38  VRDRHFTGHDCY 3
           +++RH T H CY
Sbjct: 99  LKERHITLHHCY 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,865
Number of Sequences: 438
Number of extensions: 3466
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)