Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12h24f
         (573 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    31   0.41 
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    31   0.41 
At5g36200.1 68418.m04364 F-box family protein contains Pfam PF00...    29   2.2  
At5g12960.1 68418.m01486 expressed protein                             28   3.8  
At3g10670.1 68416.m01283 ABC transporter family protein similar ...    28   5.1  
At1g49890.1 68414.m05593 expressed protein contains Pfam domain,...    28   5.1  
At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein ...    27   6.7  
At2g25250.1 68415.m03021 expressed protein                             27   6.7  
At2g43255.1 68415.m05376 expressed protein                             27   8.9  
At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)            27   8.9  
At1g70620.2 68414.m08137 cyclin-related contains weak similarity...    27   8.9  
At1g70620.1 68414.m08138 cyclin-related contains weak similarity...    27   8.9  

>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 25/60 (41%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 92  RIRSDHRRSPKH--GPPISHRSRLACRRRSDPASDQPSYGQPRRGSQLLRRFNHSPRMGP 265
           R RS  R SP+   G P+  RS L  RRRS P     S   PRR    +RR + SP   P
Sbjct: 279 RYRSPPRGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRS--PPRRSP--IRRRSRSPIRRP 334


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 25/60 (41%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 92  RIRSDHRRSPKH--GPPISHRSRLACRRRSDPASDQPSYGQPRRGSQLLRRFNHSPRMGP 265
           R RS  R SP+   G P+  RS L  RRRS P     S   PRR    +RR + SP   P
Sbjct: 286 RYRSPPRGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRS--PPRRSP--IRRRSRSPIRRP 341


>At5g36200.1 68418.m04364 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain; similar to unknown protein
           (pir||T00841)
          Length = 471

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 339 DYLVETTHKFIHPRYIEILGGVQTDDIALVKLNHHIPYSRYIQP--CRLQNSEQKNINYE 512
           D ++  T+   H   + +L G   D I LV  N H+  +R+I+P     Q  ++  I YE
Sbjct: 103 DDILNNTYIIFHCNGLLLLLGFTDDGIKLVVTNPHLGQTRWIKPRKANYQFCDKYAIGYE 162


>At5g12960.1 68418.m01486 expressed protein
          Length = 865

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 318 LTNLTRPDYLVETTHKFIHPRYIEILGGVQTDDIALVKLNHHIP 449
           L ++TR    +   H F  P ++ +L  +Q DDI+    N HIP
Sbjct: 305 LYSITRDSKYLFLAHLFDKPCFLGVLA-IQADDISGFHANTHIP 347


>At3g10670.1 68416.m01283 ABC transporter family protein similar to
           ABC transporter ATPase GB:AAC68280 [Chlamydia
           trachomatis]
          Length = 338

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -3

Query: 211 GLTIRRLI*CGI*ASSAGQPATMRDWRSVFRRSSMIASDPALTGLP*TRDTVYKIPI 41
           G +  R++ C + A+SA  P      RSV   +S ++S      L   RD V +IP+
Sbjct: 35  GTSPSRVLLCNLRANSAAAPILRTTRRSVIVSASSVSSAVDSDSLVEDRDDVGRIPL 91


>At1g49890.1 68414.m05593 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 659

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 134 PISHRSRLACRRRSDPASDQPSYGQP 211
           P+SHR     RRRS P  DQ    +P
Sbjct: 166 PVSHRKSTPERRRSTPVRDQRENSKP 191


>At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein
           contains Prosite PS00028: Zinc finger, C2H2 type,
           domain; weak similarity to Zinc finger protein T86
           (Swiss-Prot:O00488) [Homo sapiens]
          Length = 198

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/76 (23%), Positives = 29/76 (38%)
 Frame = +2

Query: 56  YCIPCSGQSG*CRIRSDHRRSPKHGPPISHRSRLACRRRSDPASDQPSYGQPRRGSQLLR 235
           YC+ C        +R DH ++ KH   ++     A   + D A      G P  G +L+ 
Sbjct: 59  YCLHCDRYFSNVSVRDDHFKTKKHKKRVNMMMGQAPHSQLD-ADLAGGMGMPDNGPKLMS 117

Query: 236 RFNHSPRMGPDCGPLP 283
               +    P+   LP
Sbjct: 118 NLVFTELRKPETEDLP 133


>At2g25250.1 68415.m03021 expressed protein
          Length = 155

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 116 SPKHGPPISHRSRLACRRRSDPASDQPSYGQP 211
           S    PP+ H+  +  RRR  P+S Q     P
Sbjct: 17  STNTSPPLRHKKPITNRRRRSPSSHQSQISHP 48


>At2g43255.1 68415.m05376 expressed protein
          Length = 214

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 179 DLSVFCRPTGYDARLAVRVSEIFDDRF*SGINRIALN 69
           D+S+F  P  Y A  A+  S++F+    S +N+I ++
Sbjct: 142 DISIFDHPISYVAASALTGSQVFNIHIVSYVNKIIIS 178


>At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)
          Length = 133

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 56  YCIPCSGQSG*CRIRSDHRRSPKHGPPISHRSRLACRRRSDPASDQP 196
           YC+ C+  S   R+RS   R  +  PP     R A R+   P   QP
Sbjct: 73  YCVSCAIHSHVVRVRSRTNRRVRTPPP-----RFARRKEDTPKPGQP 114


>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 884

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = +2

Query: 98  RSDHRRSPKHGPPISHRSRLACRRRSDPASDQPSYGQPRRGSQLLRRFNHSPRMG 262
           +S  RR      P+  RSR   R+RS P+SD+ S    R+ S   +R N SP  G
Sbjct: 832 KSRSRRRSVSPSPV--RSR---RKRSSPSSDESSDDSKRKSSS--KRKNRSPSPG 879


>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 897

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = +2

Query: 98  RSDHRRSPKHGPPISHRSRLACRRRSDPASDQPSYGQPRRGSQLLRRFNHSPRMG 262
           +S  RR      P+  RSR   R+RS P+SD+ S    R+ S   +R N SP  G
Sbjct: 802 KSRSRRRSVSPSPV--RSR---RKRSSPSSDESSDDSKRKSSS--KRKNRSPSPG 849


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,879,110
Number of Sequences: 28952
Number of extensions: 262861
Number of successful extensions: 657
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)