Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12h23f
         (542 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    22   3.0  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   3.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   3.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   3.0  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    21   5.3  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    21   5.3  

>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 96  NSHYVEGESRYIWMPDGEGVPQLVDLHEPIDYELLGSRSGA 218
           +S  + GE+ YI   DG+   Q   LH  +DY       GA
Sbjct: 146 HSKEIRGENTYILALDGDIDFQPEALHLLVDYMKKNKTLGA 186


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 96  NSHYVEGESRYIWMPDGEGVPQLVDLHEPIDYELLGSRSGA 218
           +S  + GE+ YI   DG+   Q   LH  +DY       GA
Sbjct: 460 HSKEIRGENTYILALDGDIDFQPEALHLLVDYMKKNKTLGA 500


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 96  NSHYVEGESRYIWMPDGEGVPQLVDLHEPIDYELLGSRSGA 218
           +S  + GE+ YI   DG+   Q   LH  +DY       GA
Sbjct: 693 HSKEIRGENTYILALDGDIDFQPEALHLLVDYMKKNKTLGA 733


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 96  NSHYVEGESRYIWMPDGEGVPQLVDLHEPIDYELLGSRSGA 218
           +S  + GE+ YI   DG+   Q   LH  +DY       GA
Sbjct: 693 HSKEIRGENTYILALDGDIDFQPEALHLLVDYMKKNKTLGA 733


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory
          receptor candidate 55 protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 2  TYTVSHHETLHS 37
          +Y  +HH+TLH+
Sbjct: 9  SYFTTHHDTLHN 20


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory
          receptor candidate 11 protein.
          Length = 344

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 2  TYTVSHHETLHS 37
          +Y  +HH+TLH+
Sbjct: 9  SYFTTHHDTLHN 20


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,705
Number of Sequences: 336
Number of extensions: 2835
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13306679
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)