Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12h23f
(542 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0674 - 21745321-21746223,21746229-21747608 33 0.11
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615... 29 3.2
06_03_0024 - 15563574-15563632,15563887-15563914,15564017-155642... 29 3.2
12_02_0478 + 19514509-19514940,19515749-19515820,19515954-195159... 28 4.2
10_05_0046 + 8516043-8516425,8517908-8518019,8518276-8518377,851... 28 4.2
09_04_0502 - 18163192-18163435,18164000-18164154,18164243-181644... 28 4.2
06_01_1175 - 10094144-10094387,10094573-10094730,10094851-100950... 28 4.2
08_02_1372 + 26500093-26500154,26500733-26500933,26501858-265019... 27 7.3
01_01_0477 + 3511047-3511233,3512131-3512198,3512285-3512373,351... 27 7.3
12_01_0561 + 4550119-4550265,4550716-4550791,4551601-4551668,455... 27 9.7
08_02_0159 + 13403198-13403581 27 9.7
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 33.5 bits (73), Expect = 0.11
Identities = 24/74 (32%), Positives = 34/74 (45%)
Frame = +1
Query: 286 STP*GIHTTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSLLTGTDLLIQTTI 465
ST G ++ P+ PLS+ST T+ LSS +P L T TD + TT
Sbjct: 582 STATGKTSSTPSTSPLSTSTSKTSSTPSTSPLSSSTIKIPTTARTGELSTPTDKIPTTTR 641
Query: 466 LPPLASRMSVAPSA 507
L++ S P+A
Sbjct: 642 AGDLSTATSKIPTA 655
>08_02_1143 +
24659105-24659386,24660171-24660272,24661259-24661521,
24661775-24661874,24662080-24662238,24662327-24663147,
24663299-24663618,24665831-24667398
Length = 1204
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 535 ALLMSQTKKL-PRARPTSGTPAAAVL*FELASLCQSTTMT 419
+L+ S T+ L P+A PTS AA V +L SLC T
Sbjct: 527 SLISSNTENLSPQALPTSSESAAGVTIDDLRSLCSQEFFT 566
>06_03_0024 -
15563574-15563632,15563887-15563914,15564017-15564202,
15564283-15564332,15564435-15564691,15564772-15564910,
15565627-15565716,15567354-15567663
Length = 372
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 290 LREEFTLPRQPRYRCHRPRMEQQWQHPDEPSHQIRLPCRSRRE 418
+ + F P QP +R P + + PDEP H+ P S+ E
Sbjct: 177 IHQSFEEPDQPVHRTETPALGYHAE-PDEPIHRTEAPALSQPE 218
>12_02_0478 +
19514509-19514940,19515749-19515820,19515954-19515986,
19516169-19516830,19516905-19517045,19518634-19518830,
19518878-19518965,19518987-19519041,19519501-19519571,
19519709-19519763,19519881-19519896,19520286-19520361,
19521202-19521240,19521312-19521333
Length = 652
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/84 (23%), Positives = 38/84 (45%)
Frame = -2
Query: 529 LMSQTKKLPRARPTSGTPAAAVL*FELASLCQSTTMTFTS*TARKADLMRGFIWVLPLLF 350
L Q +++ + GTP A V +++ C S + T + ++ DL+ G + V+P
Sbjct: 518 LTVQKRRITPSTDFLGTPVAEVAHWQILDACNSNSHTVPN--VQEIDLLHGKLTVVPASV 575
Query: 349 HPWTMTTVPRLAR*CEFLTELMLP 278
P+ + R+ E L + P
Sbjct: 576 -PFLAILICRICSCSEQLLSFLTP 598
>10_05_0046 +
8516043-8516425,8517908-8518019,8518276-8518377,
8518605-8518657,8518976-8519062,8519162-8519830,
8520154-8520214,8520295-8520342
Length = 504
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 194 ITGLQKRRQ*SVLAFHQTEPKQSPGAC 274
+TG +KR+ +V F Q +P Q G C
Sbjct: 384 VTGAKKRKSGNVRRFEQNKPTQGQGEC 410
>09_04_0502 -
18163192-18163435,18164000-18164154,18164243-18164447,
18164530-18164819,18164845-18164853,18164920-18165085,
18165170-18165258,18165365-18165432,18165843-18166164
Length = 515
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 36 ALAGLVTLCSGVAIPTIPGDNSHYVEGESRYI 131
AL +V+L S + IPT G+ + VEG RY+
Sbjct: 406 ALDYIVSLESDIFIPTYDGNMAKVVEGHRRYL 437
>06_01_1175 -
10094144-10094387,10094573-10094730,10094851-10095055,
10095184-10095473,10095605-10095770,10095872-10095960,
10096060-10096127,10097185-10097473
Length = 502
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 36 ALAGLVTLCSGVAIPTIPGDNSHYVEGESRYI 131
AL LV+L S + +PT G+ + VEG RY+
Sbjct: 393 ALDYLVSLESDIFVPTYDGNMAKVVEGHRRYM 424
>08_02_1372 +
26500093-26500154,26500733-26500933,26501858-26501936,
26502652-26502752,26503417-26503516,26503893-26503934,
26504026-26504067,26504352-26504509,26504708-26504780
Length = 285
Score = 27.5 bits (58), Expect = 7.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 5 YTVSHHETLHSACWFSYIMLW 67
Y HHE ++SAC +Y+ W
Sbjct: 263 YPAEHHEAMNSACMNTYMPPW 283
>01_01_0477 +
3511047-3511233,3512131-3512198,3512285-3512373,
3512607-3512769,3512846-3513135,3513231-3513435,
3513518-3513675,3514091-3514337
Length = 468
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 36 ALAGLVTLCSGVAIPTIPGDNSHYVEGESRY 128
AL +V++ S V IP+ G+ + VEG RY
Sbjct: 358 ALDYMVSIASDVFIPSYDGNMARVVEGHRRY 388
>12_01_0561 +
4550119-4550265,4550716-4550791,4551601-4551668,
4551951-4552039,4552136-4552313,4553096-4553229,
4553307-4553520,4553601-4553785,4553930-4554025,
4554105-4554231
Length = 437
Score = 27.1 bits (57), Expect = 9.7
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +3
Query: 36 ALAGLVTLCSGVAIPTIPGDNSHYVEGESRYIW-----MPDGEGVPQLVDL 173
AL +V++ S V IP+ G+ + VEG R++ PD G+ +L DL
Sbjct: 323 ALDYIVSVESDVFIPSHSGNMARAVEGHRRFLGHRKTVTPDRRGLVELFDL 373
>08_02_0159 + 13403198-13403581
Length = 127
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -2
Query: 523 SQTKKLPRARPTSGTPAAAVL 461
S + + PRARPTSG+P A++
Sbjct: 61 SSSARQPRARPTSGSPNHALV 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,898,586
Number of Sequences: 37544
Number of extensions: 362954
Number of successful extensions: 1054
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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