Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12h23f
(542 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31710.1 68415.m03870 expressed protein 30 0.87
At1g14020.1 68414.m01656 expressed protein contains Pfam PF03138... 30 1.1
At2g03280.1 68415.m00282 expressed protein contains Pfam PF03138... 29 2.0
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 29 2.7
At1g25300.1 68414.m03140 octicosapeptide/Phox/Bem1p (PB1) domain... 28 3.5
At1g57570.1 68414.m06533 jacalin lectin family protein similar t... 27 6.1
At5g56160.1 68418.m07006 SEC14 cytosolic factor family protein /... 27 8.1
At5g46820.1 68418.m05768 hypothetical protein contains similarit... 27 8.1
At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family... 27 8.1
At1g22460.1 68414.m02807 expressed protein similar to axi 1 [Nic... 27 8.1
>At2g31710.1 68415.m03870 expressed protein
Length = 105
Score = 30.3 bits (65), Expect = 0.87
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 6/46 (13%)
Frame = +3
Query: 330 VVIVHGWNNN---GNTQMNP---LIRSAFLAVQDVNVIVVDWHRLA 449
+ I++G+NN+ G+T ++P + S FLAV VNV++V + LA
Sbjct: 20 IAILYGFNNDLLPGSTTLSPHSLTLLSGFLAVVSVNVVIVFYICLA 65
>At1g14020.1 68414.m01656 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'growth regulator protein -related' based on similarity
to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
tabacum], which, due to scienitific fraud was retracted.
Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
PMID:10400497.
Length = 499
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +3
Query: 36 ALAGLVTLCSGVAIPTIPGDNSHYVEGESRYIW-----MPDGEGVPQLVDLH 176
AL +V++ S IPT G+ + VEG RY+ + D + + +L+DLH
Sbjct: 382 ALDFMVSVASNTFIPTYDGNMAKVVEGHRRYLGYKKTILLDRKRLVELLDLH 433
>At2g03280.1 68415.m00282 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as ' axi
1 protein from Nicotiana tabacum -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 481
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +3
Query: 36 ALAGLVTLCSGVAIPTIPGDNSHYVEGESRYIW-----MPDGEGVPQLVDLH 176
AL +V++ S IPT G+ + VEG RY+ + D + + +L+DLH
Sbjct: 379 ALDFIVSVASNTFIPTYYGNMAKVVEGHRRYLGFKKTILLDRKRLVELLDLH 430
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 248 EPKQSPGACERQHQLREEFTLPRQPRYRCHRPRMEQQWQHPDEP 379
+PK P + +Q ++E P QP+ + P+ E Q P +P
Sbjct: 477 QPKPKPES-PKQESPKQEAPKPEQPKPKPESPKQESSKQEPPKP 519
>At1g25300.1 68414.m03140 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein similar to unknown protein
GI:4262226 from [Arabidopsis thaliana] contains Pfam
profile PF00564: PB1 domain
Length = 272
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 57 LCS--GVAIPTIPGDNSHYVEGESRYIWMPDGEGVPQLVDLHEPIDYELLGSRS 212
LCS G +P P + HY+ GE+R + +P G +D + + +LL RS
Sbjct: 14 LCSYGGRIMPLPPEKSLHYIGGETRLVIVPRG---ISFLDFFKLLSDKLLSGRS 64
>At1g57570.1 68414.m06533 jacalin lectin family protein similar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767; contains Pfam profile PF01419
jacalin-like lectin domain
Length = 614
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +3
Query: 267 VLVNGNINSVR--NSHYRANRGTVVIVHGWNN 356
V V+ N+ +VR HY NR VV HGWN+
Sbjct: 342 VYVSSNVMNVRYIKFHYY-NRAVVVRQHGWNS 372
>At5g56160.1 68418.m07006 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
similar to phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus] and SEC14 cytosolic
factor (SP:P45816) [Candida lipolytica]
Length = 592
Score = 27.1 bits (57), Expect = 8.1
Identities = 23/69 (33%), Positives = 33/69 (47%)
Frame = +1
Query: 307 TTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSLLTGTDLLIQTTILPPLASR 486
TTAP V ST T +P+ TL +P + SS TG+ + T I+PPL+ +
Sbjct: 359 TTAPLHVRDYDST--TCTISPKETLKEEPEPEEY---YSS--TGSRSSMHTCIVPPLSDK 411
Query: 487 MSVAPSATF 513
S + F
Sbjct: 412 ASTSDGDKF 420
>At5g46820.1 68418.m05768 hypothetical protein contains similarity
to carboxyl-terminal proteinase contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 352
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 311 PRQPRYRCHRPRMEQQWQHPDEPSHQIRL 397
P++P Y C + QHP +HQI++
Sbjct: 11 PQEPEYECVDIYKQPSLQHPKLQNHQIQM 39
>At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family
protein
Length = 571
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +1
Query: 376 TLSSDPPSLPFKT*MSSLLTGTDLLIQTTILPPLASRMSVAPSAT 510
+L + S+P SS +T T + +++ P +S++++AP+ T
Sbjct: 263 SLMEEMASIPASKLFSSPITSTPVKTTSSLAKPTSSQINIAPTPT 307
>At1g22460.1 68414.m02807 expressed protein similar to axi 1
[Nicotiana tabacum] GI:559921; contains Pfam profile
PF03138: Plant protein family
Length = 565
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +3
Query: 36 ALAGLVTLCSGVAIPTIPGDNSHYVEGESRYIW-----MPDGEGVPQLVD 170
AL +V++ S V IP+ G+ + VEG R++ PD + + +LVD
Sbjct: 448 ALDYIVSIESDVFIPSYSGNMARAVEGHRRFLGHRKTISPDRKAIVRLVD 497
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,240,178
Number of Sequences: 28952
Number of extensions: 267508
Number of successful extensions: 751
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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