Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12h19r
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    29   3.2  
AF016676-1|AAG24103.1|  598|Caenorhabditis elegans Hypothetical ...    28   7.3  
U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
           protein F40G12.3 protein.
          Length = 1099

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -2

Query: 694 CCVPD--NPINKTSLNHEDNWRTA 629
           CC P+  N +N  S+ H  NWRTA
Sbjct: 136 CCFPEVVNYLNTHSVGHVKNWRTA 159


>AF016676-1|AAG24103.1|  598|Caenorhabditis elegans Hypothetical
           protein F41B5.6 protein.
          Length = 598

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -2

Query: 613 K*QHYPSKVKAQFTPASLHRHERECFRRRPLVPLTVQSWLDVSFTLTGLKRDADT 449
           K  H+P  V+      S+H    E   ++PLV LT    LD S T   +K + DT
Sbjct: 348 KANHHPLSVQHHLQQNSVHTSIAERIDQQPLVELTSGIHLD-SSTAVKIKSNLDT 401


>U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical
           protein F57F4.2 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 331 IHYI-LMEFVA*VVFKNYIEKETKIHRKFYNRYLNV 435
           +HYI +++FV   +F++YI+   K     YN YL +
Sbjct: 256 MHYIKILKFVLIAIFQSYIQFLKKTKYILYNCYLTI 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,856,405
Number of Sequences: 27780
Number of extensions: 297608
Number of successful extensions: 669
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)