Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12h19f
         (604 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27350.1 68414.m03331 expressed protein contains 1 transmembr...    56   1e-08
At1g27330.1 68414.m03329 expressed protein similar to EST gb|AA6...    56   1e-08
At1g31960.1 68414.m03929 hypothetical protein                          29   3.1  
At5g35010.1 68418.m04132 hypothetical protein similar to At3g243...    28   4.1  
At5g52460.1 68418.m06509 F-box family protein contains F-box dom...    27   9.6  
At3g28860.1 68416.m03602 multidrug resistance P-glycoprotein, pu...    27   9.6  

>At1g27350.1 68414.m03331 expressed protein contains 1 transmembrane
           domain; similar to ribosome associated membrane protein
           RAMP4 GI:4585827 [Rattus norvegicus]; similar to ESTs
           gb|T20610 and gb|AA586199
          Length = 68

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 26/45 (57%), Positives = 33/45 (73%)
 Frame = +3

Query: 144 KNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIQS 278
           KNI  RG VP+TT +K   YPV P LL  F+FVV GS++FQII++
Sbjct: 17  KNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIRT 61


>At1g27330.1 68414.m03329 expressed protein similar to EST
           gb|AA650671 and gb|T20610
          Length = 68

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 26/45 (57%), Positives = 33/45 (73%)
 Frame = +3

Query: 144 KNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIQS 278
           KNI  RG VP+TT +K   YPV P LL  F+FVV GS++FQII++
Sbjct: 17  KNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIRT 61


>At1g31960.1 68414.m03929 hypothetical protein
          Length = 173

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 480 NPVSVKETSSHDCTVKGTNGRLRKHSL 400
           NP S++     D  VKG+NG +R HS+
Sbjct: 105 NPTSIRRKLFDDAGVKGSNGVVRFHSV 131


>At5g35010.1 68418.m04132 hypothetical protein similar to At3g24380,
           At5g36840, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790
          Length = 230

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 400 ERVFSEAAISTFNCAIVA*CLFHTYRVKTGRRYIRLLGTLRYRL 531
           ER+    A +TF CAI+  C  + +    G  Y+RL G+  Y L
Sbjct: 115 ERIAPRNAAATFTCAILYICAGNAH---MGGVYLRLFGSNHYAL 155


>At5g52460.1 68418.m06509 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 369

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 501 KVIRDVEVSVVEFSMNFCLFFNIIFKDNSS 590
           K+I DV  SV   S+N    F ++FKD +S
Sbjct: 119 KIIVDVPSSVCLPSLNILRLFYVVFKDENS 148


>At3g28860.1 68416.m03602 multidrug resistance P-glycoprotein,
           putative similar to mdr-like P-glycoprotein GI:3849833
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF00005: ABC transporter and PF00664: ABC transporter
           transmembrane region; identical to cDNA MDR-like
           p-glycoprotein (At3g28860) GI:24324261
          Length = 1252

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -1

Query: 187 SLVVLGTFPLIVMFLLAISLAIR 119
           SL++LGTFPL+V+   A  L+++
Sbjct: 833 SLLILGTFPLLVLANFAQQLSLK 855


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,922,897
Number of Sequences: 28952
Number of extensions: 270702
Number of successful extensions: 606
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)