Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12h16f
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813...    30   1.2  
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543...    30   1.2  
02_04_0240 - 21194597-21194743,21195579-21195680,21195797-211958...    29   2.8  
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704     28   4.8  
11_01_0607 - 4837257-4837447,4837526-4837631,4837913-4838005,483...    27   8.5  
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075...    27   8.5  

>08_02_0200 -
           14179389-14180488,14180575-14180736,14180983-14181383,
           14182078-14182272,14182980-14183094,14183180-14183428,
           14184032-14184093,14184335-14184435,14184701-14184815,
           14185211-14185302,14187619-14187777
          Length = 916

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 224 LKGSGSW*EQYQRTVGTIDSRWV 156
           +KG   W  +YQR  GTID  W+
Sbjct: 701 VKGLDEWPNEYQRQYGTIDLYWI 723


>01_02_0116 -
           11252220-11253313,11253398-11253559,11253977-11254306,
           11254328-11254377,11255195-11255389,11255532-11255625,
           11255713-11255961,11256831-11256892,11257434-11257534,
           11257766-11257880,11258384-11258475,11259197-11259333,
           11259721-11259760
          Length = 906

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 224 LKGSGSW*EQYQRTVGTIDSRWV 156
           +KG   W  +YQR  GTID  W+
Sbjct: 693 VKGLDEWPNEYQRQYGTIDLYWI 715


>02_04_0240 -
           21194597-21194743,21195579-21195680,21195797-21195875,
           21195921-21196043,21196135-21196193,21196453-21196974,
           21197434-21198177,21198426-21198506
          Length = 618

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +3

Query: 123 SIPAWSKLKYSYPS*INGSNSALVLFSPTTTTFQLLPVSMENSTILHTVALSLDLPVAVS 302
           S+P  +  K S+ S +  SNS    F  +     ++P S + ++ LHT  +SL     VS
Sbjct: 400 SLPRAAVNKGSHVSHVALSNSTTQKFVTSHPKHSVMPNSSQRASTLHTTQVSLKRSAGVS 459

Query: 303 PV 308
            V
Sbjct: 460 SV 461


>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
          Length = 748

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +1

Query: 361 LRQGCEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYF 471
           L  GC+    N C   R K+P  C  P  C NTPG F
Sbjct: 293 LLDGCQD--INECEDSRFKYP--CSVPGTCINTPGGF 325


>11_01_0607 -
           4837257-4837447,4837526-4837631,4837913-4838005,
           4838405-4838542,4838651-4838778,4838889-4839049,
           4839145-4839235,4841437-4841602
          Length = 357

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 195 LFSPTTTTFQLLPVSMENSTILH-TVALSLDLPVAVSPVKYLMFTLL 332
           LF P T  F L+  +  ++ I +   AL       VSP+ Y+MFT L
Sbjct: 203 LFYPQTWAFALIVATCVSTQINYLNKALDTFNTAVVSPIYYVMFTSL 249


>04_04_0859 + 28805836-28805842,28806405-28806492,28807474-28807558,
            28807638-28807763,28807819-28807968,28808497-28808541,
            28808612-28808875,28809843-28809887,28810395-28810430,
            28812048-28812816,28813063-28813925,28814024-28814182,
            28814440-28814558,28815356-28815417,28816677-28816805,
            28817395-28817460,28817757-28817890,28818025-28818162,
            28818630-28818889,28818996-28819107,28819590-28819675,
            28820655-28820735,28822841-28822928,28823222-28823260,
            28823847-28823964,28824063-28824130,28824884-28824981,
            28825238-28825397,28825691-28825816,28825876-28825945,
            28826046-28826449
          Length = 1664

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 481  QINKNTLGYYDTLLDNSTLLDVWAEVDGMC 392
            +IN+N LGY   LL +   LDV A ++  C
Sbjct: 1575 EINRNELGYTHLLLASRLPLDVGAYLERTC 1604


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,887,226
Number of Sequences: 37544
Number of extensions: 328158
Number of successful extensions: 875
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)