Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12h15r
         (711 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    24   1.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.5  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   9.9  

>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 352 RINDKIMPTTGKNFRDYSNGTMGSLHDYYMKKKC 453
           +I +  +  TGKNF   + G + S  DY++   C
Sbjct: 370 QIGNSDIAITGKNFFSITRGLILSFVDYFVFLLC 403


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 569  KRKICSRQKSVKCQSQ 616
            +RKIC   KS KC+ +
Sbjct: 1140 ERKICDWPKSAKCEEK 1155


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 458 VQSTHVRSETFLAN*FVSLAYIYTNL 535
           VQSTHV + T LA+   S+    T+L
Sbjct: 668 VQSTHVGNYTCLASNSASVTTYTTSL 693


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -1

Query: 369 YFVVYSLQLTCFLNKIHNIKNTLRH 295
           + + Y  +L   ++K+H + N L+H
Sbjct: 96  FCLFYQNKLIEVISKLHKLDNKLKH 120


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,900
Number of Sequences: 336
Number of extensions: 3089
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)