Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12h15r
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225           30   2.1  
01_05_0637 + 23860857-23860936,23861057-23861273,23861388-238615...    29   4.8  

>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
          Length = 554

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 541 LDFRDLERGKKKDMFPPKVCQMSISNLSVDSHIMFRFLN 657
           +DFRDL +   KD +P  +  M I++ S   H +  FL+
Sbjct: 160 IDFRDLNKATPKDEYPMPIADMMINDAS--GHKVISFLD 196


>01_05_0637 +
           23860857-23860936,23861057-23861273,23861388-23861549,
           23862850-23863155
          Length = 254

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = -1

Query: 492 KKVSLLTCVLCTHALFFHIIIM*RPHCSIRIISKVFASRRHYFVVYSLQLTCFLNKI 322
           KK S++  +LC   +FF  I+   P   + I+ KV  ++   ++ + L L CFLN +
Sbjct: 128 KKRSMIVGILC---VFFGSIMYFSP---LTIMGKVIKTKSVEYMPFFLSLVCFLNGV 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,285,930
Number of Sequences: 37544
Number of extensions: 243909
Number of successful extensions: 360
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)