Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12h15r
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35593| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)                 30   2.1  
SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_56908| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  

>SB_35593| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)
          Length = 224

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +2

Query: 488 FLAN*FVSLAYIYTNLKL*ISEI*REGKRKICSRQKSVKCQSQTSVLTVTLCLDF*IV 661
           F AN  +S++  Y+ L   I    R+ + ++CSR+    CQS +     T+ + F I+
Sbjct: 87  FYANASMSISVHYSVLLFRIYTRVRQNRIQVCSRKNRAACQSASDAENQTMIVAFMII 144


>SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 568 KKKDMFPPKVCQMSISNLSVDSHIMFRFLNCK 663
           K K+   P+VC   +S+L  D  ++F   +CK
Sbjct: 706 KSKEFHNPRVCVFKLSDLEEDEDVVFTREDCK 737


>SB_56908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1003

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 414 CSIRIISKVFASRRHYFVVYSLQLTCFLN 328
           CS    SK+F S RH   VY L + C +N
Sbjct: 99  CSSPCHSKLFVSDRHQHAVYMLDMHCPVN 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,980,197
Number of Sequences: 59808
Number of extensions: 336287
Number of successful extensions: 508
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)