Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12h15r
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82051-10|CAB04822.2|  577|Caenorhabditis elegans Hypothetical p...    28   5.7  
Z81124-14|CAJ85776.1|  360|Caenorhabditis elegans Hypothetical p...    28   5.7  
Z81124-13|CAJ85775.1|  362|Caenorhabditis elegans Hypothetical p...    28   5.7  
AL021175-11|CAA15973.2|  577|Caenorhabditis elegans Hypothetical...    28   5.7  

>Z82051-10|CAB04822.2|  577|Caenorhabditis elegans Hypothetical
           protein T23D5.2 protein.
          Length = 577

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 529 KSKTLDF-RDLERGKKKDMFPPKVCQMSISNLSVDSHIMFRFLNCK 663
           KSK  +   ++E+     + PP V +  + N+SV+ H  FR + CK
Sbjct: 345 KSKRKELAEEVEKWMNLRVLPPNVMRTLVENMSVEEHATFRGV-CK 389


>Z81124-14|CAJ85776.1|  360|Caenorhabditis elegans Hypothetical
           protein T21B4.4b protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 486 VSLLTCVLCTHALFFHIIIM*RPHCSIRIISKVFASRR 373
           V L+ C+LCT + F  + I    + +I    ++F+SRR
Sbjct: 79  VHLILCILCTISTFHMLAIAIDKYVTICCRDRIFSSRR 116


>Z81124-13|CAJ85775.1|  362|Caenorhabditis elegans Hypothetical
           protein T21B4.4a protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 486 VSLLTCVLCTHALFFHIIIM*RPHCSIRIISKVFASRR 373
           V L+ C+LCT + F  + I    + +I    ++F+SRR
Sbjct: 79  VHLILCILCTISTFHMLAIAIDKYVTICCRDRIFSSRR 116


>AL021175-11|CAA15973.2|  577|Caenorhabditis elegans Hypothetical
           protein T23D5.2 protein.
          Length = 577

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 529 KSKTLDF-RDLERGKKKDMFPPKVCQMSISNLSVDSHIMFRFLNCK 663
           KSK  +   ++E+     + PP V +  + N+SV+ H  FR + CK
Sbjct: 345 KSKRKELAEEVEKWMNLRVLPPNVMRTLVENMSVEEHATFRGV-CK 389


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,055,077
Number of Sequences: 27780
Number of extensions: 273414
Number of successful extensions: 458
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)