Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12h15f
         (611 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27810.2 68415.m03372 xanthine/uracil permease family protein...    28   5.6  
At2g27810.1 68415.m03371 xanthine/uracil permease family protein...    28   5.6  
At1g19025.1 68414.m02368 DNA cross-link repair protein-related c...    28   5.6  
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains...    27   9.8  

>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 660

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 244 GLELPMSIIAGT-GVGTGALQLVVNIHT 324
           GLE   S++AG  G GTG+  L  N+HT
Sbjct: 488 GLEGFTSVLAGLWGTGTGSTTLTENVHT 515


>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 709

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 244 GLELPMSIIAGT-GVGTGALQLVVNIHT 324
           GLE   S++AG  G GTG+  L  N+HT
Sbjct: 488 GLEGFTSVLAGLWGTGTGSTTLTENVHT 515


>At1g19025.1 68414.m02368 DNA cross-link repair protein-related
           contains weak similarity to Swiss-Prot:P30620 DNA
           cross-LINK repair protein PSO2/SNM1 [Saccharomyces
           cerevisiae]
          Length = 549

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 314 LTTNCNAPVPTPVPAIMLIGNSR 246
           L  + NAPVP P+P++M + N+R
Sbjct: 518 LYRSMNAPVPRPLPSLMELMNAR 540


>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
           Pfam profile: PF00004 ATPase family
          Length = 520

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 495 KFAFINFFLSYMNLFQIYIHFSAD*EVL*SSTNNLTRHCIFYIYSLVS 352
           +FAF+ FF    ++F  Y +F    E+   +TN L      Y+ S VS
Sbjct: 31  RFAFLKFFNRIFHVFSSYCYFDIT-EIDGVNTNELYNAVQLYLSSSVS 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,564,223
Number of Sequences: 28952
Number of extensions: 223846
Number of successful extensions: 554
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)