Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12h05r
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0286 + 16504756-16504953,16505364-16505588,16505739-165057... 33 0.18
02_03_0351 + 18030656-18030823,18030963-18031113,18031214-180313... 31 1.3
03_02_0532 + 9255634-9257034,9257234-9257347,9257975-9258239,925... 30 1.7
12_01_0894 - 8661025-8661147,8661701-8661769,8661798-8661800 29 3.9
04_03_0755 + 19310648-19311603,19312420-19312633 29 3.9
03_05_0065 + 20450814-20452748 29 3.9
12_01_0059 + 494876-494924,496060-496211,496344-496531,496971-49... 29 5.1
11_01_0058 + 438000-438230,438847-438902,440003-440117,440314-44... 29 5.1
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 29 5.1
05_01_0570 + 5061600-5062142,5062790-5062972 29 5.1
02_04_0411 + 22670418-22670499,22670708-22671045 29 5.1
01_05_0612 - 23652121-23652400,23653031-23654427 29 5.1
01_05_0302 + 20637139-20637291,20637390-20637476,20637609-206378... 29 5.1
10_08_0108 + 14860469-14861032 28 6.7
06_03_0739 + 24004629-24005219 28 6.7
06_01_1145 - 9575173-9575553,9575712-9575858,9575971-9576024,957... 28 6.7
05_04_0069 - 17639386-17641380 28 6.7
02_04_0343 - 22166148-22166318,22166422-22166465,22166563-221666... 28 6.7
10_08_0032 - 14288522-14290465 28 8.9
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526... 28 8.9
>10_08_0286 +
16504756-16504953,16505364-16505588,16505739-16505794,
16505913-16506007,16506696-16506796,16507043-16507234
Length = 288
Score = 33.5 bits (73), Expect = 0.18
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +1
Query: 13 GLDPRGETGNANVNTRVSDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRRPKHQSTT 192
GLD + +G +NT+V G T R R ED+ +HP D+ P T
Sbjct: 100 GLDDKWYSGRIFLNTKVEAGDSLTQTNGREARFWTFVEEDNGNHPVVNADYIPPHWNETI 159
Query: 193 C 195
C
Sbjct: 160 C 160
>02_03_0351 +
18030656-18030823,18030963-18031113,18031214-18031309,
18032027-18032103,18032627-18032706,18033216-18033276,
18034153-18034220,18034312-18034393,18034552-18034638,
18035009-18035086,18035336-18035455,18035554-18035730
Length = 414
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 179 TRAQHVSGDSTVNGSVTLDAGILIDGPDLDVTELLRIRPSERCSTPTSSPNNLVI 343
TRA H SG+ST+ G++ + D PD+D L+ + P+ SP + I
Sbjct: 132 TRALHFSGNSTIEGAINWLSEHQED-PDIDEPLLVPANTITEANKPSLSPEEMKI 185
>03_02_0532 +
9255634-9257034,9257234-9257347,9257975-9258239,
9258346-9258461
Length = 631
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +1
Query: 4 FRIGLDPRGETGNANVNTRVSDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDH 165
F + L R G A T+ SDG + PK + +G GED R H +H
Sbjct: 201 FGVPLSGRRSNGPAEPTTK-SDGDYRSTPKGNVEWAQGMAGED-RFHVAVSEEH 252
>12_01_0894 - 8661025-8661147,8661701-8661769,8661798-8661800
Length = 64
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +3
Query: 108 RTRLWRRGPPESPWHWSRPPTSKTPEHN 191
R LW PE PW W + + HN
Sbjct: 33 RQGLWAYDNPEKPWEWRKNKRKASEHHN 60
>04_03_0755 + 19310648-19311603,19312420-19312633
Length = 389
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 22 PRGETGNANVNTRVS-DGQRSTVPKSRHQRGRGCGGED 132
P G V TR++ Q+ T + + QRG GCGG D
Sbjct: 73 PPGSPRGMAVGTRLAVQQQQPTKTQQQRQRGIGCGGAD 110
>03_05_0065 + 20450814-20452748
Length = 644
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 145 GDSGGPLLHNRVLVGVCSWGQYCADRRL 62
GD+ G + +N ++ G C GQ A RRL
Sbjct: 74 GDAAGVVAYNAMVAGYCRAGQLAAARRL 101
>12_01_0059 +
494876-494924,496060-496211,496344-496531,496971-497027,
497123-497282,497389-497457,497712-497837,497972-498091
Length = 306
Score = 28.7 bits (61), Expect = 5.1
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 117 LWRRGPPESPWHWSR 161
LW G PE PW W R
Sbjct: 279 LWASGNPEKPWDWRR 293
>11_01_0058 +
438000-438230,438847-438902,440003-440117,440314-440424,
442331-442518,442957-443013,443109-443268,443368-443436,
443580-443699
Length = 368
Score = 28.7 bits (61), Expect = 5.1
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 117 LWRRGPPESPWHWSR 161
LW G PE PW W R
Sbjct: 341 LWASGNPEKPWDWRR 355
>10_08_0106 + 14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 91 KSRHQRGRGCGGEDHRSHPGTGRDHRR 171
+SR +RG G G H +H G G RR
Sbjct: 1040 RSRERRGGGSDGNHHHNHGGGGGHKRR 1066
>05_01_0570 + 5061600-5062142,5062790-5062972
Length = 241
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 52 NTRVSDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRRPKHQSTT 192
+ R +R+T +SR GRG G R G RRP+ + TT
Sbjct: 135 SARPRQRRRATRARSRLSAGRGDGVGGARGRAVRGSARRRPRKEETT 181
>02_04_0411 + 22670418-22670499,22670708-22671045
Length = 139
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/43 (41%), Positives = 18/43 (41%)
Frame = -1
Query: 166 GGRDQCQGDSGGPLLHNRVLVGVCSWGQYCADRRLPWC*RSRF 38
GG D GD GGP H R G C G Y DR C F
Sbjct: 96 GGGDD--GDCGGPCEHRRCEYGCCE-GGYGGDRGHRCCDHGEF 135
>01_05_0612 - 23652121-23652400,23653031-23654427
Length = 558
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -1
Query: 523 GSTFANSGGVVHNVNRII--IHPNYNRRTADSD 431
G T A S ++R++ +HPN NR+T DSD
Sbjct: 64 GITVAFSAAAPPAISRLLFALHPNKNRQTTDSD 96
>01_05_0302 +
20637139-20637291,20637390-20637476,20637609-20637836,
20638014-20638184,20638843-20638896,20639028-20639174,
20639326-20639706
Length = 406
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 724 VPTNPQRIIGGSTTNXNQYPGIAALLYTWNWNQWWQSCGGN 602
+ TNPQ +IGGS + + Y + Y +++ W GGN
Sbjct: 249 IQTNPQFVIGGSLSPVSIY---GSTQYEYDYLVWKDPAGGN 286
>10_08_0108 + 14860469-14861032
Length = 187
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 87 PQEQTPTRTRLWRRGPPESPWHWSR 161
P+ P R R WRR +PWH R
Sbjct: 23 PRTTLPLRCRRWRRRRRLAPWHGGR 47
>06_03_0739 + 24004629-24005219
Length = 196
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1
Query: 574 AAHCPYGDATGRWRIRVGSTFANSGGVVHNVNRIIIH 464
AAH PY + R+ + G +GG + RII H
Sbjct: 160 AAHTPYSECPSRFAVADGEGRVYAGGYAWSPRRIIRH 196
>06_01_1145 -
9575173-9575553,9575712-9575858,9575971-9576024,
9576692-9576862,9577004-9577231,9577392-9577478,
9577600-9577761
Length = 409
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 724 VPTNPQRIIGGSTTNXNQYPGIAALLYTWNWNQWWQSCGGN 602
+ TNPQ +IGGS + + Y Y +++ W GGN
Sbjct: 252 IQTNPQFVIGGSISPVSTY---GDTQYEYDYLVWKDPAGGN 289
>05_04_0069 - 17639386-17641380
Length = 664
Score = 28.3 bits (60), Expect = 6.7
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = -1
Query: 586 SILSAAHCPYGDATGRWRIRVGSTFANSGGVVHNV---NRIIIHPNYNRRTADSDLCILR 416
S L AAH +GDA G W + S GV NV N ++ N + R D+ L ++R
Sbjct: 90 SALIAAHASHGDAEGAWGL---LERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVR 146
>02_04_0343 -
22166148-22166318,22166422-22166465,22166563-22166626,
22166729-22167109,22167296-22167475,22167661-22167790,
22167844-22167946,22168060-22168093,22168216-22168300,
22168389-22168453,22168592-22168690,22168960-22169025,
22169200-22169439
Length = 553
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -1
Query: 346 GDNQVVWAAGWGATSLGGSNSEQLRHVQV-WTINQNACVQRYRPINRAITANMLCSGV 176
GD + AAGW A S + E+ R +Q ++ +A +R I R A M+ G+
Sbjct: 7 GDREGKSAAGWTALSTTKTTLEEKRRLQANGSVGGDAGTSGFRRIVRLFFACMVAGGI 64
>10_08_0032 - 14288522-14290465
Length = 647
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 529 RVGSTFANSGGVVH-NVNRIIIHPNYNRRTADSDLCILRSNSNIAY 395
R+G A++ ++ +VN+++IHP R+ + + + +AY
Sbjct: 465 RIGELVASNFSIIGVDVNQVVIHPRLGRKGYEMIIAFMNPEGMLAY 510
>08_01_0600 -
5262573-5262773,5262850-5262952,5263050-5263180,
5263263-5263312,5265266-5265725,5266349-5266708
Length = 434
Score = 27.9 bits (59), Expect = 8.9
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = +3
Query: 90 QEQTPTRTRLWRRGPPESPWHWSRPPTSKTPEH 188
Q+ P ++W + PP P W + P P +
Sbjct: 34 QQYAPPPPQMWGQAPPPPPQMWGQAPPPPQPAY 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,592,068
Number of Sequences: 37544
Number of extensions: 573549
Number of successful extensions: 1793
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1792
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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