Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12h05r
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...   101   4e-22
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    87   9e-18
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    60   2e-09
AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed ...    31   1.1  
U40959-4|AAA81768.1|  112|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC006805-1|AAK68515.1|  129|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical p...    29   4.5  
Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF022968-5|AAB69885.2| 1080|Caenorhabditis elegans Adenylyl cycl...    29   4.5  
AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like ...    29   4.5  
Z70756-9|CAA94797.1|  275|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi...    28   7.9  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score =  101 bits (243), Expect = 4e-22
 Identities = 75/227 (33%), Positives = 111/227 (48%), Gaps = 7/227 (3%)
 Frame = -1

Query: 718 TNPQRIIGGSTTNXNQYPGIAALLYTWNWNQWWQSCGGNILNQRSILSAAHCPYGDATGR 539
           T   R+IGGS ++ + +P    LL     ++    CGG++++   +L+AAHC   D    
Sbjct: 53  TLDHRLIGGSESSPHSWPWTVQLLSRLGHHR----CGGSLIDPNFVLTAAHCFAKDRRPT 108

Query: 538 -WRIRVGSTFANSGGVVHNVNRIIIHPNYNRRTADS-DLCILRSNSNIAYNNNVRPINIA 365
            + +RVG   + SG   H V  + IHP YN     S D  I+R +  +  +   RPI + 
Sbjct: 109 SYSVRVGGHRSGSGSP-HRVTAVSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPICLP 167

Query: 364 GANYNLGDNQVVWAAGWGATSLGGS-NSEQLRHVQVWTINQNACVQRYRPINRAITANML 188
             +    +N++    GWG+T  G S ++  LR + V  ++   C      I R    +ML
Sbjct: 168 --SLPAVENRLCVVTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSML 225

Query: 187 CSGVLDVGGRDQCQGDSGGPLLHNR----VLVGVCSWGQYCADRRLP 59
           C+G    G  D CQGDSGGPL+  R     L GV SWG  CA   +P
Sbjct: 226 CAGY-SYGKIDSCQGDSGGPLMCARDGHWELTGVVSWGIGCARPGMP 271


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 87.4 bits (207), Expect = 9e-18
 Identities = 69/226 (30%), Positives = 107/226 (47%), Gaps = 10/226 (4%)
 Frame = -1

Query: 706 RIIGGSTTNXNQYPGIAALLYTWNWNQWWQSCGGNILNQRSILSAAHCPYGDA-TGRWRI 530
           R++GG  T    +P  AAL    N       CG +IL++  +++AAHC   D     + +
Sbjct: 26  RVVGGFETVPGAFPWTAALR---NKATKAHHCGASILDKTHLITAAHCFEEDERVSSYEV 82

Query: 529 RVGSTFANS---GGVVHNVNRIIIHPNYNRRTADSDLCILR-SNSNIAYNNNVRPINIAG 362
            VG    N       +  + RI  +P Y +     D+ IL      I +N   +PI +  
Sbjct: 83  VVGDWDNNQTDGNEQIFYLQRIHFYPLY-KDIFSHDIAILEIPYPGIEFNEYAQPICLPS 141

Query: 361 ANYNLGDNQVVWAAGWGATSLGGSNSEQLRHVQVWTINQNACVQRYRPINRAITANMLCS 182
            ++     +    +GWG  S+G   +E+L+   +  IN+  CV   + I  +++ +  C+
Sbjct: 142 KDFVYTPGRQCVVSGWG--SMGLRYAERLQAALIPIINRFDCVNSSQ-IYSSMSRSAFCA 198

Query: 181 GVLDVGGRDQCQGDSGGPLLHNR-----VLVGVCSWGQYCADRRLP 59
           G L+ GG D CQGDSGGP    R     VL GV SWG  CA ++ P
Sbjct: 199 GYLE-GGIDSCQGDSGGPFACRREDGAFVLAGVISWGDGCAQKKQP 243


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 64/223 (28%), Positives = 106/223 (47%), Gaps = 16/223 (7%)
 Frame = -1

Query: 706 RIIGGSTTNXNQYPGIAALLYTWNWNQWWQSCGGNILNQRSILSAAHCPYGDATGRWRIR 527
           RIIGG++ +        A L ++  N     CG  +++   +++AAHC     T R  + 
Sbjct: 37  RIIGGNSIDDGA--NWMAKLVSYGDNGQGILCGATVIDDFWLVTAAHCALQLQT-RSFVY 93

Query: 526 VGSTFANSGGVVHNVNRIIIHPNYNRRTADSDLCILRSNSNIAYNNNVRPINIAGANYNL 347
           V     N+     +V    IH  YN +TAD+D+ +LR +S+++    ++P+ +   +  L
Sbjct: 94  VREP-KNNRERSFSVKEAYIHSGYNNQTADNDIALLRISSDLS-KLGIKPVCLVHDDSKL 151

Query: 346 ---GDNQVVWAAG--WGATSLGGS---NSEQLRHVQVWTINQNACVQRYR---PINRAIT 200
                N VV   G   G  S G     NS+ L+   V  I+ + CV+ +R    ++  IT
Sbjct: 152 LKQYKNGVVIGYGLTLGEDSSGEPKLINSQTLQSTSVPIISDDDCVKTWRFLSLLSVKIT 211

Query: 199 ANMLCSGVLDVGGRDQCQGDSGGPLLHNR-----VLVGVCSWG 86
              +C+G    G      GDSGGPLL ++     V +G+ S+G
Sbjct: 212 GYQICAGAYLHG---TAPGDSGGPLLIHKSNGEYVQIGITSYG 251


>AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed
           with polycystins protein4 protein.
          Length = 402

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +2

Query: 434 TVSSTSVIVGMNDNSVHVMHNTPTVGKGGTNTNTPTACSVTVWTVSGTKDRSLVKDVSTT 613
           T ++T +I G    +V     T TV   GT T  PT  + T   ++GT   ++  + +TT
Sbjct: 205 TTTTTVLINGTTTTTVPTNETTTTVPLNGTTTTVPTNETTTTSPLNGTTTTTVPINGATT 264


>U40959-4|AAA81768.1|  112|Caenorhabditis elegans Hypothetical
           protein B0310.4 protein.
          Length = 112

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/60 (30%), Positives = 22/60 (36%)
 Frame = +1

Query: 13  GLDPRGETGNANVNTRVSDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRRPKHQSTT 192
           G   RGET      T   +  R    + +  RG    GE HR     G  HR   H+  T
Sbjct: 8   GESHRGETHRGE--THRGETHRGETHRGKTHRGETHRGETHRGETHRGETHRGETHRGKT 65



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/56 (30%), Positives = 20/56 (35%)
 Frame = +1

Query: 25  RGETGNANVNTRVSDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRRPKHQSTT 192
           RGET      T   +  R    +    RG    GE HR     G  HR   H+  T
Sbjct: 17  RGETHRGE--THRGETHRGKTHRGETHRGETHRGETHRGETHRGETHRGKTHRGET 70



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/56 (30%), Positives = 20/56 (35%)
 Frame = +1

Query: 25  RGETGNANVNTRVSDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRRPKHQSTT 192
           RGET      T      R    +    RG    GE HR     G+ HR   H+  T
Sbjct: 22  RGETHRGE--THRGKTHRGETHRGETHRGETHRGETHRGETHRGKTHRGETHRGET 75



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/56 (30%), Positives = 20/56 (35%)
 Frame = +1

Query: 25  RGETGNANVNTRVSDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRRPKHQSTT 192
           RGET      T   +  R    +    RG    GE HR     G  HR   H+  T
Sbjct: 27  RGETHRGK--THRGETHRGETHRGETHRGETHRGETHRGKTHRGETHRGETHRGET 80


>AC006805-1|AAK68515.1|  129|Caenorhabditis elegans Hypothetical
           protein Y54B9A.1 protein.
          Length = 129

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/58 (31%), Positives = 23/58 (39%)
 Frame = +1

Query: 19  DPRGETGNANVNTRVSDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRRPKHQSTT 192
           D RGET      TR  + +R    +    RG    GE HR     G  HR   ++  T
Sbjct: 29  DLRGETHRGE--TRRGETRRGETHRGETHRGETHRGETHRGETHRGETHRGETYRGET 84



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/63 (26%), Positives = 24/63 (38%)
 Frame = +1

Query: 4   FRIGLDPRGETGNANVNTRVSDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRRPKHQ 183
           F I L+P G+     +     +  R    +   +RG    GE HR     G  HR   H+
Sbjct: 12  FWIVLEPYGKFKKMLLRDLRGETHRGETRRGETRRGETHRGETHRGETHRGETHRGETHR 71

Query: 184 STT 192
             T
Sbjct: 72  GET 74



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/56 (30%), Positives = 20/56 (35%)
 Frame = +1

Query: 25  RGETGNANVNTRVSDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRRPKHQSTT 192
           RGET      T   +  R    +    RG    GE HR     G  HR   H+  T
Sbjct: 41  RGETRRGE--THRGETHRGETHRGETHRGETHRGETHRGETYRGETHRGETHRGET 94


>Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical
           protein C30H6.4 protein.
          Length = 476

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
 Frame = +2

Query: 299 ERCSTPTSSPNNLVITKIVIGTSNINRTNVV--VISYVGITA*DAEVTVSSTSVIVGMND 472
           E     T++P     T I   TS+   T+    V++   +T+     T +ST        
Sbjct: 256 ETTKPTTTTPTTTTTTTIPSTTSSTTSTSTTTSVVTTTTVTSTTEPTTSTSTPT------ 309

Query: 473 NSVHVMHNTPTVGKGGTNTNTPTACSVTVWTVSGTKDRSLVKDV 604
            +  +   TP+     T T+T T  S +  T+S TK  +   D+
Sbjct: 310 TTTTMQTTTPSTTSTPTTTSTTTTTSASTTTISTTKPPTTQIDI 353


>Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical
           protein F56H9.6 protein.
          Length = 245

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/84 (23%), Positives = 30/84 (35%)
 Frame = +2

Query: 362 TSNINRTNVVVISYVGITA*DAEVTVSSTSVIVGMNDNSVHVMHNTPTVGKGGTNTNTPT 541
           T++   T     +   IT    EVT ++  V       +      T T     T T TPT
Sbjct: 29  TADPTTTTTEATTTTEITTTTEEVTTTTEPVTTTTTPTTTSTTSTTTTTTPTTTTTTTPT 88

Query: 542 ACSVTVWTVSGTKDRSLVKDVSTT 613
             + T  T + T   +     +TT
Sbjct: 89  TTTSTTSTTTTTTPTTTTSTTTTT 112


>AF022968-5|AAB69885.2| 1080|Caenorhabditis elegans Adenylyl cyclase
            protein 2 protein.
          Length = 1080

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 454  NRRTADSDLCILRSNSNIAYNNNVRPINIAGANYNL 347
            N   AD D   L   ++  YNNN+R  N+A  N NL
Sbjct: 913  NESEADYDDIYLEKQNSGKYNNNIRHGNMAFRNANL 948


>AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like
           protease protein 7 protein.
          Length = 522

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = -1

Query: 706 RIIGGSTTNXNQYP-GIAALLYTWNWNQWWQSCGGNILNQRSILSAAHCPYG-DATGRWR 533
           ++  G   + ++ P  +   LY+ +  Q   +C G I++ R IL A HC  G +  G W 
Sbjct: 162 KVYNGRDASQSEAPWSVFTYLYSKD-EQSATTCTGTIVSPRHILIATHCFAGQNRDGSWN 220

Query: 532 IRVGSTFANS 503
           + +  TF  S
Sbjct: 221 L-IEDTFDRS 229


>Z70756-9|CAA94797.1|  275|Caenorhabditis elegans Hypothetical
           protein T06E4.11 protein.
          Length = 275

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +3

Query: 57  QGKRRSAQ----YCPQEQTPTRTRLWRRGPPESPWHWSRPPTSKTP 182
           QG + SAQ    Y   +Q P   + + + PP+ P  +++PP  + P
Sbjct: 41  QGYQDSAQVPQGYPQSQQAPQAPQGYPQQPPQDPTQYAQPPQQQQP 86


>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
           la related protein)homolog protein 1, isoform b protein.
          Length = 1065

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +3

Query: 63  KRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSRPPTSKTPEHNMLAVIA 209
           K+R+ +  P++  P + +   R   + PW  S  P +  P    + V A
Sbjct: 111 KKRAVEPTPKQAAPIKEKSKSRESKKEPWKTSTAPAATAPVTETVTVAA 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,848,101
Number of Sequences: 27780
Number of extensions: 441784
Number of successful extensions: 1325
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)