Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12h05r
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05030.1 68415.m00525 hypothetical protein                          32   0.35 
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do...    30   1.4  
At2g36250.2 68415.m04450 chloroplast division protein FtsZ (FtsZ...    29   2.4  
At2g36250.1 68415.m04449 chloroplast division protein FtsZ (FtsZ...    29   2.4  
At5g47140.1 68418.m05811 zinc finger (GATA type) family protein ...    29   4.3  
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ...    29   4.3  
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein        29   4.3  
At1g13920.1 68414.m01633 remorin family protein contains Pfam do...    28   5.6  
At3g56170.1 68416.m06243 Ca(2+)-dependent nuclease identical to ...    28   7.4  
At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein con...    28   7.4  
At2g45430.1 68415.m05651 DNA-binding protein-related contains Pf...    28   7.4  
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar...    28   7.4  
At2g17240.1 68415.m01991 expressed protein                             28   7.4  
At5g67300.1 68418.m08486 myb family transcription factor contain...    27   9.8  
At3g24506.1 68416.m03075 expressed protein                             27   9.8  

>At2g05030.1 68415.m00525 hypothetical protein
          Length = 205

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 64  SDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRRPKHQS 186
           S G+RS +P+S        G +DHR   G  +DHRR + Q+
Sbjct: 65  SSGERS-LPRSSTSTDDRVGYQDHRRDQGQDQDHRRDQQQN 104


>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
           domain-containing protein contains Pfam profiles
           PF02170: PAZ domain, PF02171: Piwi domain
          Length = 1194

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 7   RIGLDPRGETGNANVNTRVSDGQRSTVPKSRHQ-RGRGCGGEDHRSHPGTGRDHRR 171
           R G   RG +G  + + R   G R      R   RGRG GG+  R + G G  H R
Sbjct: 35  RGGDGDRGYSGRGDGHGRGGGGDRGRGYSGRGDGRGRGGGGDRGRGYSGRGDGHGR 90


>At2g36250.2 68415.m04450 chloroplast division protein FtsZ
           (FtsZ2-1) identical to chloroplast division protein
           AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
           division protein FtsZ [Arabidopsis thaliana] GI:14195704
          Length = 478

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = -1

Query: 367 AGANYNLGDNQVVWAAGWGATSLGGSNSEQLRHVQVWTINQNACVQRYRPI---NRAITA 197
           A +NYN    +V+   G G+ ++      ++  V+ W +N +    R  P+   NR    
Sbjct: 112 APSNYNEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIVNTDIQAMRMSPVLPDNRLQIG 171

Query: 196 NMLCSGVLDVGGRDQ 152
             L  G L  GG  +
Sbjct: 172 KELTRG-LGAGGNPE 185


>At2g36250.1 68415.m04449 chloroplast division protein FtsZ
           (FtsZ2-1) identical to chloroplast division protein
           AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
           division protein FtsZ [Arabidopsis thaliana] GI:14195704
          Length = 478

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = -1

Query: 367 AGANYNLGDNQVVWAAGWGATSLGGSNSEQLRHVQVWTINQNACVQRYRPI---NRAITA 197
           A +NYN    +V+   G G+ ++      ++  V+ W +N +    R  P+   NR    
Sbjct: 112 APSNYNEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIVNTDIQAMRMSPVLPDNRLQIG 171

Query: 196 NMLCSGVLDVGGRDQ 152
             L  G L  GG  +
Sbjct: 172 KELTRG-LGAGGNPE 185


>At5g47140.1 68418.m05811 zinc finger (GATA type) family protein
           contains Pfam:PF00320 GATA zinc finger domain
          Length = 470

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 60  GKRRSAQYCPQEQTPTRTRLWRRGPPESP 146
           GK+    +C    TP    LWR GPPE P
Sbjct: 2   GKQGPCYHCGVTSTP----LWRNGPPEKP 26


>At5g03360.1 68418.m00289 DC1 domain-containing protein contains Pfam
            profile PF03107: DC1 domain
          Length = 1610

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 100  HQRGRGCGGEDHRSHPGTGRDHRRPKH 180
            H R RGC GE+H+ +     D + P H
Sbjct: 1223 HFRCRGCNGENHKGYEQAPVDVKHPLH 1249


>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
          Length = 510

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 60  GKRRSAQYCPQEQTPTRTRLWRRGPPESP 146
           GK+    +C    TP    LWR GPPE P
Sbjct: 2   GKQGPCYHCGVTNTP----LWRNGPPEKP 26


>At1g13920.1 68414.m01633 remorin family protein contains Pfam
           domain, PF03763: Remorin, C-terminal region
          Length = 345

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 33  NGKRER*HQGKRRSAQYCPQEQTPTRTRLWRRGPPESP 146
           N   E  H+ +R+     P+ Q P RTR   R PP  P
Sbjct: 171 NQDSEEKHERQRKPVSEPPRIQPPLRTRSEPRAPPPPP 208


>At3g56170.1 68416.m06243 Ca(2+)-dependent nuclease identical to
           Ca(2+)-dependent nuclease [Arabidopsis thaliana]
           GI:7684292; supporting cDNA gi|7684291|dbj|D84226.1|
          Length = 323

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +3

Query: 63  KRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSR 161
           KR        E    R  LW    PE PW W +
Sbjct: 285 KRAELAKWENEARQKRVGLWASSNPEKPWEWRK 317


>At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase BGQ60 precursor GB:A57512
           [Hordeum vulgare]; similar to beta-mannosidase enzyme
           (GI:17226270) [Lycopersicon esculentum]
          Length = 512

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 310 HPNQQPKQLGYHQDCN 357
           HP  +PK LGY QD N
Sbjct: 356 HPTTKPKDLGYQQDWN 371


>At2g45430.1 68415.m05651 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 317

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 7   RIGLDPRGETGNANVNTRVSDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGR 159
           RIG   R    + + N   S G+  + P S  + G G GG++H +    GR
Sbjct: 44  RIGGLKRDRDADIDPNEHSSAGKDQSTPGSGGESGGGGGGDNHITRRPRGR 94


>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
            hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
            PF02854: MIF4G domain
          Length = 1186

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 13   GLDPRGETGNANVNTRVSDGQRSTVPKSRHQRGRGCG-GEDHRSHPGTGRD 162
            G +   ++G+ +V   V DGQ   +    H+RG   G G+D+    G G D
Sbjct: 939  GEESDSDSGSGSV---VRDGQNEELDDGNHERGSESGDGDDYDDGDGPGSD 986


>At2g17240.1 68415.m01991 expressed protein
          Length = 140

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +3

Query: 63  KRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSRPPTSKTPE 185
           +R   Q       P   +L RR P + P  W RP   + P+
Sbjct: 50  RRNRNQLQVVSMAPEEEKLTRRNPLDFPIEWERPKPGRRPD 90


>At5g67300.1 68418.m08486 myb family transcription factor contains
           PFAM profile: myb DNA binding domain PF00249
          Length = 305

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 112 RGCGGEDHRSHPGTGRDHRRPK 177
           R CGG DHR + G+  DHR  K
Sbjct: 105 RKCGGYDHRGYDGS-EDHRPVK 125


>At3g24506.1 68416.m03075 expressed protein
          Length = 149

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 102 PTRTRLWRRGPPESPWHWSRPPTSKTPE 185
           P   +L RR P + P  W RP   + P+
Sbjct: 71  PEEEKLTRRNPLDFPIEWERPKPGRRPD 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,018,942
Number of Sequences: 28952
Number of extensions: 415602
Number of successful extensions: 1310
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)