Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12h02r
         (707 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   2.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.2  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   5.6  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   7.4  
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    21   9.8  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -1

Query: 698 LERLEMWSGYWQCSPDFIAIETWIKSK 618
           L  L++  G W C  D   +E W + +
Sbjct: 698 LTDLKLMGGKWSCDCDLGWVEVWERKR 724


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 653 DFIAIETWIKSKGINYQN 600
           DF+ +E W+ S G  Y +
Sbjct: 152 DFVRVEAWVGSDGSLYNH 169


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 408 ESLNRREFPIELFQGRQRAFRFRYFC 485
           +   RR F   + Q   +A RFRY C
Sbjct: 57  QQARRRAFVKIIEQPASKALRFRYEC 82


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 423 REFPIELFQGRQRAFRFRYFCSLVFI 500
           R  P +LF+ ++R    + +   VFI
Sbjct: 334 RRVPFDLFENKKRKNNIKLYVRRVFI 359


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 105 WWWSLGSVWDTDGV 146
           WW  L + +D DGV
Sbjct: 100 WWNELEAKYDKDGV 113


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,572
Number of Sequences: 336
Number of extensions: 3370
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)