Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12h02r
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    28   1.5  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    27   3.5  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.5  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    26   6.1  
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    26   6.1  
SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       26   6.1  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   8.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.0  

>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/36 (27%), Positives = 14/36 (38%)
 Frame = -1

Query: 671 YWQCSPDFIAIETWIKSKGINYQNQCTKGPKRSEKI 564
           Y +C P ++  E W  S G      C     R E +
Sbjct: 382 YVECKPGYVLYEPWYSSLGFWPSKYCVSDTSREESV 417


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/57 (22%), Positives = 27/57 (47%)
 Frame = -3

Query: 555 CES*KSASRFEHSVEYDSK*KRDYKSNGIETPFDAPGKVR*GILCDSSSRYGPRNGF 385
           C+  +   R+   +E+ +  +  +  +  + PF  PG++     CD  S+Y  +N F
Sbjct: 646 CQKKRDDYRYSPEIEFKAAFREKFLQSNEKVPFPRPGEIY-EKRCDYFSKYACQNIF 701


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 245 STIINPDVETPPTAPNRRPPGGVSNTTDGARHADAIRVPNRSETPP 108
           ST  NP+V  PP +    P   +S+++       AI  P+ S  PP
Sbjct: 148 STTSNPNV-APPISTLPDPVATISSSSSSHLDMGAIHPPHHSSLPP 192


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
 Frame = +3

Query: 402 HNESLNRRE---FPIELFQGRQ------RAFRFRYFCSLVFIYCRIPHCAQIDWRFFKTH 554
           HN   N++E     IE+F  +Q         R +  C L  IYCR+    ++  +F K+ 
Sbjct: 20  HNTVDNKQEKLPLSIEIFLNKQINKISFDTIRSKQNCRLKEIYCRLKIRCRLKKKFIKSL 79

Query: 555 S*YNLF*PFRSLRTLVLII 611
           S   +   F S  T+V+++
Sbjct: 80  SKKIISYHFISFHTIVVLL 98


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 471 IETPFDAPGKVR*GILCDSSSRYGPRNG 388
           +++ F+A G+V  G+L D S +Y P  G
Sbjct: 1   MKSTFEAAGRVAKGMLKDPSKKYKPFKG 28


>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 158

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
 Frame = -1

Query: 230 PDVETPPTAPNRRP--PGGVSNTTD--GARHADAIRVPNRSETPPPPYN 96
           P  E P  +  +    PG  S  TD    R    I  P +S+  PPPY+
Sbjct: 73  PTPERPEASAQQHAFFPGSSSQQTDIPNVRPQPHIPPPRKSDEAPPPYS 121


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -1

Query: 296 TRRLQRSDAEMRANLLWSTIINPDVETPPTAPNRRPPGGVSNTTDGARHADAIRV 132
           +R L+R  AE       S  ++ + +  P  P R PP G S T  G    + +++
Sbjct: 734 SRCLKRLFAESEHEKTMSETVSENSKWMPEMPTRMPPPGPSPTMFGRSLENQLKI 788


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 260  ANLLWSTIINPDVETPPTAPNRRPPGGVSNTTDGARHADAIRVPNRSETPPP 105
            +N+L S    P  + PP+AP  +P     +T+  A  A    VP  S   PP
Sbjct: 976  SNILSSPTSEPPKDHPPSAPLSKP----VSTSPAAPLARVPPVPKLSSKAPP 1023


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,986
Number of Sequences: 5004
Number of extensions: 56410
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)