Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12h02r
(707 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 30 1.6
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 30 1.6
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022) 29 2.8
SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0) 29 2.8
SB_40460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06) 28 6.5
SB_32967| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_49943| Best HMM Match : zf-nanos (HMM E-Value=9.2) 28 8.5
SB_38222| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_16378| Best HMM Match : DCX (HMM E-Value=0.7) 28 8.5
SB_6135| Best HMM Match : CSD (HMM E-Value=5.4) 28 8.5
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 28 8.5
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Frame = -1
Query: 230 PDVETPPTAPNRRPPGGVSNT-TDG------ARHADAIRVPNRSETPPPP 102
P + PP +P G S T T+G +RH A P RS PPPP
Sbjct: 169 PPMGKPPPPSGNKPTFGNSRTSTNGPPPPPHSRHGSAPPPPERSSGPPPP 218
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Frame = -1
Query: 230 PDVETPPTAPNRRPPGGVSNT-TDG------ARHADAIRVPNRSETPPPP 102
P + PP +P G S T T+G +RH A P RS PPPP
Sbjct: 81 PPMGKPPPPSGNKPTFGNSRTSTNGPPPPPHSRHGSAPPPPERSSGPPPP 130
>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
Length = 1421
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -1
Query: 233 NPDVETPPTAPNRRPPGGVSNTTDGARHADAIRVPNRSETPPP 105
NP + T AP +RP G + DG HAD + + PPP
Sbjct: 236 NPRI-TSGRAPPKRPLGSTPDNLDGILHADVGLGRYQRKGPPP 277
>SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1321
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 242 TIINPDVETPPTAPNRRPPGGVSNTTDGARHADAIRVPNRSETP 111
T+ V PPT+ N+ SN DGA + ++PN + P
Sbjct: 1253 TVPEVQVVCPPTSVNQDYTDTPSNVNDGAPLLEGNKIPNENNVP 1296
>SB_40460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = -1
Query: 251 LWSTIINPDVETPP--TAPNRRPPGGVSNTTD--GARHADAIRVPNRSETPPPP 102
+++T+ +P +PP T P P GG ++ G ADA VP R++ P P
Sbjct: 327 VFATLPSPKSASPPRHTLPRPEPIGGPVRGSEPKGVARADAPPVPARTDQTPRP 380
>SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)
Length = 295
Score = 28.3 bits (60), Expect = 6.5
Identities = 6/24 (25%), Positives = 12/24 (50%)
Frame = +3
Query: 96 IVWWWWSLGSVWDTDGVSVSGSIG 167
++ WWW +G+ W + +G
Sbjct: 171 VIQWWWKVGNTWGCENGKCGNGLG 194
>SB_32967| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Frame = +3
Query: 210 RWSFHIR--IDDGTPK*IR-SHFSIGTLQSASSTPHVRSTAKTSTRKESSQPDIRSDYAD 380
RW+ H+R D PK + GT + T K S ++ PD + AD
Sbjct: 295 RWAGHVRRMSDTRIPKQLLYGELHYGTRSKGGQKKRYKDTLKVSAKQFGIDPDNWEELAD 354
Query: 381 S*THF 395
TH+
Sbjct: 355 DRTHW 359
>SB_49943| Best HMM Match : zf-nanos (HMM E-Value=9.2)
Length = 153
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Frame = +3
Query: 210 RWSFHIR--IDDGTPK*IR-SHFSIGTLQSASSTPHVRSTAKTSTRKESSQPDIRSDYAD 380
RW+ H+R D PK + GT + T K S ++ PD + AD
Sbjct: 14 RWAGHVRRMSDTRIPKQLLYGELHYGTRSKGGQKKRYKDTLKVSAKQFGIDPDNWEELAD 73
Query: 381 S*THF 395
TH+
Sbjct: 74 DRTHW 78
>SB_38222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Frame = +3
Query: 210 RWSFHIR--IDDGTPK*IR-SHFSIGTLQSASSTPHVRSTAKTSTRKESSQPDIRSDYAD 380
RW+ H+R D PK + GT + T K S ++ PD + AD
Sbjct: 227 RWAGHVRRMSDTRIPKQLLYGELHYGTRSKGGQKKRYKDTLKVSAKQFGIDPDNWEELAD 286
Query: 381 S*THF 395
TH+
Sbjct: 287 DRTHW 291
>SB_16378| Best HMM Match : DCX (HMM E-Value=0.7)
Length = 754
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Frame = +3
Query: 210 RWSFHIR--IDDGTPK*IR-SHFSIGTLQSASSTPHVRSTAKTSTRKESSQPDIRSDYAD 380
RW+ H+R D PK + GT + T K S ++ PD + AD
Sbjct: 241 RWAGHVRRMSDTRIPKQLLYGELHYGTRSKGGQKKRYKDTLKVSAKQFGIDPDNWEELAD 300
Query: 381 S*THF 395
TH+
Sbjct: 301 DRTHW 305
>SB_6135| Best HMM Match : CSD (HMM E-Value=5.4)
Length = 254
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Frame = +3
Query: 210 RWSFHIR--IDDGTPK*IR-SHFSIGTLQSASSTPHVRSTAKTSTRKESSQPDIRSDYAD 380
RW+ H+R D PK + GT + T K S ++ PD + AD
Sbjct: 136 RWAGHVRRMSDTRIPKQLLYGELHYGTRSKGGQKKRYKDTLKVSAKQFGIDPDNWEELAD 195
Query: 381 S*THF 395
TH+
Sbjct: 196 DRTHW 200
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -1
Query: 218 TPPTAPNRRPPGGVSNTTDGARHADAIRVPNRSETPPP 105
TP T P PP S TT A + P+ ETP P
Sbjct: 279 TPSTTPQATPPSTTSQTTAPT----ASQAPSAGETPQP 312
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,852,772
Number of Sequences: 59808
Number of extensions: 437448
Number of successful extensions: 1459
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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