Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12h02r
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50028-5|CAA90338.1|  661|Caenorhabditis elegans Hypothetical pr...    33   0.26 
AL032624-4|CAA21522.1|  661|Caenorhabditis elegans Hypothetical ...    33   0.26 
AL032624-1|CAA21521.1|  209|Caenorhabditis elegans Hypothetical ...    33   0.26 
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    29   2.5  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    29   2.5  
Z70284-18|CAJ80830.1|  474|Caenorhabditis elegans Hypothetical p...    28   5.7  
Z70284-17|CAA94277.1|  517|Caenorhabditis elegans Hypothetical p...    28   5.7  
Z71186-2|CAA94915.1|  203|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z50028-5|CAA90338.1|  661|Caenorhabditis elegans Hypothetical
           protein F46F6.1a protein.
          Length = 661

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -1

Query: 230 PDVETPPTAPNRRPPGGVSNTTDGARHADAIRVPNRSETPPPP 102
           PD   PP  P RRP     ++T   + A A    +    PPPP
Sbjct: 610 PDWYAPPPLPPRRPASVGPSSTSSGQPATAFATSSAIRVPPPP 652


>AL032624-4|CAA21522.1|  661|Caenorhabditis elegans Hypothetical
           protein F46F6.1a protein.
          Length = 661

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -1

Query: 230 PDVETPPTAPNRRPPGGVSNTTDGARHADAIRVPNRSETPPPP 102
           PD   PP  P RRP     ++T   + A A    +    PPPP
Sbjct: 610 PDWYAPPPLPPRRPASVGPSSTSSGQPATAFATSSAIRVPPPP 652


>AL032624-1|CAA21521.1|  209|Caenorhabditis elegans Hypothetical
           protein F46F6.1b protein.
          Length = 209

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -1

Query: 230 PDVETPPTAPNRRPPGGVSNTTDGARHADAIRVPNRSETPPPP 102
           PD   PP  P RRP     ++T   + A A    +    PPPP
Sbjct: 158 PDWYAPPPLPPRRPASVGPSSTSSGQPATAFATSSAIRVPPPP 200


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +3

Query: 207  RRWSFHIRIDDGTPK*IRSHFSIGTLQSASSTPHVRSTAKTSTRKE----SSQPDIR 365
            +R+++  R D G+P+   S   +   +   STPH +  A  +  KE    S  PD+R
Sbjct: 4268 KRYNYRSRSDVGSPRRYASQTLLDGSRPGPSTPHAKRDALHTLTKELDSLSRSPDVR 4324


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +3

Query: 207  RRWSFHIRIDDGTPK*IRSHFSIGTLQSASSTPHVRSTAKTSTRKE----SSQPDIR 365
            +R+++  R D G+P+   S   +   +   STPH +  A  +  KE    S  PD+R
Sbjct: 4268 KRYNYRSRSDVGSPRRYASQTLLDGSRPGPSTPHAKRDALHTLTKELDSLSRSPDVR 4324


>Z70284-18|CAJ80830.1|  474|Caenorhabditis elegans Hypothetical
           protein K07F5.4b protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -1

Query: 242 TIINPDVETPPTAPNRRPPGGVSNTTDGARHADAIRVPNRSETP 111
           +++N +V+   +  NR+  GG    T    +    R P + E+P
Sbjct: 410 SVVNEEVDQDGSEKNRKVKGGSKKKTGNRHNRSGKRTPKQEESP 453


>Z70284-17|CAA94277.1|  517|Caenorhabditis elegans Hypothetical
           protein K07F5.4a protein.
          Length = 517

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -1

Query: 242 TIINPDVETPPTAPNRRPPGGVSNTTDGARHADAIRVPNRSETP 111
           +++N +V+   +  NR+  GG    T    +    R P + E+P
Sbjct: 453 SVVNEEVDQDGSEKNRKVKGGSKKKTGNRHNRSGKRTPKQEESP 496


>Z71186-2|CAA94915.1|  203|Caenorhabditis elegans Hypothetical
           protein F23D12.3 protein.
          Length = 203

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 636 DMDQIKGHQLSEPVYE 589
           D DQ KG+ LSEP+YE
Sbjct: 93  DDDQSKGYTLSEPIYE 108


>Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical
           protein F15A4.8b protein.
          Length = 808

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 270 SIGTLQSASST-PHVRSTAKTSTRKESSQPDIRS 368
           S G+L +ASS  P+V ST    T + S+ PD+ S
Sbjct: 394 SAGSLLNASSARPNVTSTTTAPTTESSAIPDVTS 427


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,398,956
Number of Sequences: 27780
Number of extensions: 326246
Number of successful extensions: 1019
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)