Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12h02r
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   2.1  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   5.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.7  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 93  FIVWWWWSLGSVWDTDGVS 149
           F++WW W   +   T GVS
Sbjct: 229 FVLWWGWLAFNSGSTYGVS 247


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 261 SHFSIGTLQSASSTPHVRSTAKTSTRKESSQPD 359
           S  S+GT  S SST   R++ +++     S+ D
Sbjct: 174 SECSLGTASSTSSTASSRNSDRSAGSPSVSESD 206


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 205 PLIEDHLVASLIRPMEPD 152
           P IED+L  SL RP+  +
Sbjct: 263 PEIEDNLETSLFRPLSSE 280


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 176 SNTTDGARHADAIRVPNRSETP 111
           S+TTD  RH+  + + ++  TP
Sbjct: 234 SHTTDENRHSSTLDIDHKMLTP 255


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 622 DLIHVSMAMKSGEHCQYPLHISNR 693
           ++IH +   K   H  YP+H   R
Sbjct: 574 EMIHNAQVNKRSIHNNYPVHTFGR 597


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,815
Number of Sequences: 438
Number of extensions: 4966
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)