Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12h02r
(707 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing ... 33 0.14
At1g23540.1 68414.m02960 protein kinase family protein contains ... 30 1.7
At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ... 29 4.0
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 28 5.3
At3g13980.1 68416.m01765 expressed protein 28 5.3
At1g10620.1 68414.m01204 protein kinase family protein contains ... 28 5.3
At5g65500.1 68418.m08240 protein kinase family protein contains ... 28 7.0
At5g36905.1 68418.m04423 RNase H domain-containing protein low s... 28 7.0
At3g24540.1 68416.m03082 protein kinase family protein contains ... 28 7.0
At1g72410.1 68414.m08374 COP1-interacting protein-related simila... 28 7.0
At1g56720.2 68414.m06524 protein kinase family protein contains ... 28 7.0
At1g56720.1 68414.m06523 protein kinase family protein contains ... 28 7.0
>At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing
protein low similarity to transcriptional repressor
Not4-Np [Homo sapiens] GI:6856207; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif)
Length = 944
Score = 33.5 bits (73), Expect = 0.14
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
Frame = -1
Query: 239 IINPDVETPP--TAPNRRPPGGVSN---------TTDGARHADAIRVPNRSETPPPPYN 96
+ P V PP +APNR PP G S+ TT G R D+ + N + PPP N
Sbjct: 717 VSRPQVSAPPGFSAPNRLPPPGFSSHERVGLSSDTTLGNRFLDSTSLRNAYQVPPPVGN 775
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -1
Query: 242 TIINPDVETPPTAPNRRPPGGVSNTTDGARHADAIRVPNRSETPPPPYNE 93
+I+ P ++PP + PP + + ++ P SETPP P NE
Sbjct: 69 SILPPLTDSPPPPSDSSPPVDSTPSPPPPTSNESPSPPEDSETPPAPPNE 118
>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
family protein contains Pfam domain PF04153: NOT2 / NOT3
/ NOT5 family
Length = 843
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 221 ETPPTAPNRRPPGGVSNTTDGARHADAIRVPNRSETPPPP 102
E T P+R+PP V++T R + +PN+ + PP
Sbjct: 359 EDATTLPSRKPPSSVADTP--LRGIGRVGIPNQPQPSQPP 396
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = -1
Query: 230 PDVETPPTAPNRRPPGGVSNTTDGARHADAIRVPNRSETPPPP 102
P PP P PP V+ TT G H P PPPP
Sbjct: 122 PPPPPPPPPPTITPP--VTTTTAGHHHHRRSPPPPPPPPPPPP 162
>At3g13980.1 68416.m01765 expressed protein
Length = 357
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = -2
Query: 214 HRRPLIEDHLVASLIRPMEPDTLTPSVSQTDPRLHHHHTMNAA 86
HR P L+ + R ++ + P + + HHH NA+
Sbjct: 14 HRNPSFSSTLLDQIYRSIDDSSPPPPLESIKKKKHHHQQRNAS 56
>At1g10620.1 68414.m01204 protein kinase family protein contains
serine/threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 718
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -1
Query: 215 PPTAP-NRRPPGGVSNTTDGARHADAIRVPNRSETPPPP 102
PP P N PG D ++ RVP+ S +P PP
Sbjct: 186 PPMLPLNPNSPGNPLQPLDSPLGGESNRVPSSSSSPSPP 224
>At5g65500.1 68418.m08240 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 765
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +3
Query: 120 GSVWDTDGVSVSGSIGRIRD-ATRWSSIRGRRWSFHIRIDDGTPK*IRSHFSIGTLQSAS 296
G D + +G+IR+ A + + G + + +D+G P I S F LQ
Sbjct: 643 GGNMDFSTKEIMEELGKIREKADEFKTKGGYEEATNSNMDEGDPNDIPSVFMCPILQEVM 702
Query: 297 STPHV 311
PHV
Sbjct: 703 KNPHV 707
>At5g36905.1 68418.m04423 RNase H domain-containing protein low
similarity to reverse transcriptase [Arabidopsis
thaliana] GI:976278; contains Pfam profile PF00075:
RNase H
Length = 633
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +3
Query: 90 AFIVWWWWSLGSVWDTDGVSVSGSIGRIRDATRWSSIRGRR-WSFHIRIDDG 242
A +VWW W W +V G GR RD R+ + R W H+ + G
Sbjct: 394 AIVVWWAWK----WRCG--NVFGENGRCRDRVRFVVDQAREIWIAHLNLRRG 439
>At3g24540.1 68416.m03082 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 509
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = -1
Query: 233 NPDVETPPTAPNRRPPGGVSNTTDGARHADAIRVPNRSETPPPP 102
+P TPP NR PP S G P S +PP P
Sbjct: 77 SPSTSTPPRLGNRNPPPPAS--PSGQEPTTPTMTPGFSLSPPSP 118
>At1g72410.1 68414.m08374 COP1-interacting protein-related similar
to COP1-Interacting ProteinI 7 (CIP7) [Arabidopsis
thaliana] GI:3327870
Length = 1163
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Frame = -1
Query: 218 TPPTAPN-RRPPGGVSNTTDGARHAD---AIRVPNRSE 117
TP +A + +P G VSNT+ G R +D A VPN SE
Sbjct: 789 TPRSAASVPKPSGKVSNTSSGRRRSDKSLAQSVPNFSE 826
>At1g56720.2 68414.m06524 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 492
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 331 AQEKNRRSQTYVPTMPIAKPISRPITRA*IAENSLSNFSRG 453
+++K+RRS+T +P + +S+ I + S SNF+ G
Sbjct: 45 SKKKSRRSKTGLPVIQTPPVVSKEIREVRVEHVSASNFAPG 85
>At1g56720.1 68414.m06523 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 492
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 331 AQEKNRRSQTYVPTMPIAKPISRPITRA*IAENSLSNFSRG 453
+++K+RRS+T +P + +S+ I + S SNF+ G
Sbjct: 45 SKKKSRRSKTGLPVIQTPPVVSKEIREVRVEHVSASNFAPG 85
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,521,377
Number of Sequences: 28952
Number of extensions: 304916
Number of successful extensions: 1000
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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