Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12h02f
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     29   0.37 
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   1.5  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    27   1.5  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   4.6  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   8.0  

>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 22/54 (40%), Positives = 27/54 (50%)
 Frame = -3

Query: 492 LSLLLLRFK*INFSSPEKACNPIQNIKLYDISKSFKAV*PDSLKQKLSSSLITL 331
           LSLLLL+   IN S+PE      Q I L  +   F     +S K+ L S LI L
Sbjct: 145 LSLLLLKDSFINKSNPEYESMQHQQILLKKLKLHFPRRKENSWKRSLRSGLIEL 198


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/66 (22%), Positives = 30/66 (45%)
 Frame = +2

Query: 275 IIDINVGVSKAVQVYSLKHNVISELDNFCFKESGYTALKLLDISYNLIFWIGLHAFSGLE 454
           I++I+ G    ++  SL  +V+  +      +   T   L    Y L+ W+ +  F G +
Sbjct: 589 ILEISTGSISIIKSISLSDSVVDTIGELLRSQFSNT---LNSSCYVLLQWLKVRNFGGAK 645

Query: 455 KLIYLN 472
            ++Y N
Sbjct: 646 HIVYFN 651


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -3

Query: 504 DGIYLSLLLLRFK*INFSSPEKACNPIQNIKLYDISKSFKAV*PDSLKQKLSS 346
           D ++  LL L F   NFS      N  + + L ++ K F A+ PD++++ L S
Sbjct: 600 DDVFKGLLEL-FVSDNFSENAMQWNAQRELVLKEVFKRFSALAPDAIRETLRS 651


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 334 IVLQAVHLNSFGYS-NVYIDNVLVNTNSPVQPIRHVTVTLFWTKL 203
           IV   + L++F Y  N  I   L+   S V PIR    +L W +L
Sbjct: 143 IVHGEIRLDTFHYDLNAPIHAKLLTIGSSVSPIRFTLSSLNWKRL 187


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 85  KRKINKKNASNNF*SEILITNNGVEVFYLYCILYFVCA 198
           K  + K +A+ +    I +     EVFY + IL  VC+
Sbjct: 749 KNSVYKTSANRSISGGIRLLRKSSEVFYSFSILETVCS 786


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,369,216
Number of Sequences: 5004
Number of extensions: 47782
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)