Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12h02f
(578 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06) 43 2e-04
SB_47473| Best HMM Match : LRR_1 (HMM E-Value=2.8e-10) 43 2e-04
SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33) 43 2e-04
SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08) 41 6e-04
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_51625| Best HMM Match : LRR_1 (HMM E-Value=2.7e-10) 38 0.008
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0) 37 0.010
SB_19770| Best HMM Match : LRR_1 (HMM E-Value=1.7e-06) 34 0.073
SB_45522| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_55784| Best HMM Match : CUB (HMM E-Value=3.1e-25) 33 0.17
SB_19634| Best HMM Match : LRR_1 (HMM E-Value=2.6e-17) 33 0.22
SB_36392| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_11265| Best HMM Match : LRR_1 (HMM E-Value=0.23) 32 0.39
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94) 31 0.51
SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31) 30 1.6
SB_35110| Best HMM Match : LRR_1 (HMM E-Value=3.9e-09) 29 2.1
SB_21487| Best HMM Match : MAM (HMM E-Value=0) 29 2.1
SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_46788| Best HMM Match : LRR_1 (HMM E-Value=9.1e-12) 29 3.6
SB_21029| Best HMM Match : PX (HMM E-Value=9.1e-15) 29 3.6
SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32) 29 3.6
SB_35937| Best HMM Match : LRR_1 (HMM E-Value=7.1e-09) 29 3.6
SB_42679| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-08) 28 6.3
SB_41061| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_31433| Best HMM Match : Prenyltransf (HMM E-Value=0.25) 28 6.3
SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_17109| Best HMM Match : LRR_1 (HMM E-Value=2.9e-10) 27 8.4
SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12) 27 8.4
>SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 825
Score = 43.6 bits (98), Expect = 1e-04
Identities = 30/84 (35%), Positives = 43/84 (51%)
Frame = +2
Query: 248 NRAICVDQNIIDINVGVSKAVQVYSLKHNVISELDNFCFKESGYTALKLLDISYNLIFWI 427
NR C +++ I VG+ + +L +N I +LD + +TALK LD+S N I
Sbjct: 43 NRVNCEGKHLTAIPVGIPSDITALNLGYNNIVDLDPKQLLK--FTALKELDLSRNFFTSI 100
Query: 428 GLHAFSGLEKLIYLNLSNNRLRYI 499
AF+ L L L LS NR+ I
Sbjct: 101 LASAFNRLSSLEVLKLSKNRISTI 124
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/68 (32%), Positives = 39/68 (57%)
Frame = +2
Query: 308 VQVYSLKHNVISELDNFCFKESGYTALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNR 487
+Q +L+ N +S + + FK ALK+L+++ N I+ I +FS L L L+LSNN
Sbjct: 134 LQQLNLERNRLSHIQDTTFKH--LLALKVLNLANNRIYHISQGSFSDLRSLEGLDLSNND 191
Query: 488 LRYIPSDL 511
+ + ++
Sbjct: 192 ISWTVEEM 199
Score = 32.3 bits (70), Expect = 0.29
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +2
Query: 305 AVQVYSLKHNVISELDNFCFKESGYTALKLLDISYNLIFWIGLHA---FSGLEKLIYLNL 475
A++V +L +N I + F S +L+ LD+S N I W F GL L L L
Sbjct: 157 ALKVLNLANNRIYHISQGSF--SDLRSLEGLDLSNNDISWTVEEMNGPFRGLTNLASLRL 214
Query: 476 SNNRLRYIPSDLFLG 520
NR+ I + FLG
Sbjct: 215 DGNRITAIAATAFLG 229
>SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06)
Length = 575
Score = 43.2 bits (97), Expect = 2e-04
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Frame = +2
Query: 221 CDCDM-SNGLNRAICVDQNIIDINVGVSKAVQVYSLKHNVISELDNFCFKESG---YTAL 388
C+C + +NGL A C Q++ DI + V SL +V++ F +G +T L
Sbjct: 74 CECSLDTNGLLMAACKVQHLGDIRANILHPRNVSSLVLHVVA---GFTVPSNGLQMFTNL 130
Query: 389 KLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNRL 490
L + N I I HAF GL+ L LNL +N +
Sbjct: 131 INLTLENNSISAIAPHAFKGLDNLQSLNLRHNNI 164
>SB_47473| Best HMM Match : LRR_1 (HMM E-Value=2.8e-10)
Length = 658
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = +2
Query: 371 SGYTALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNRL 490
+G+TAL+ L +++N I I F+GL KL YLN+S+NR+
Sbjct: 89 AGFTALRNLSLTFNNIHTIRARGFAGLNKLEYLNMSDNRI 128
>SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)
Length = 1065
Score = 42.7 bits (96), Expect = 2e-04
Identities = 31/92 (33%), Positives = 46/92 (50%)
Frame = +2
Query: 245 LNRAICVDQNIIDINVGVSKAVQVYSLKHNVISELDNFCFKESGYTALKLLDISYNLIFW 424
L +AIC DI G+SK + ++ + + L N F++ Y LK LD+S N I
Sbjct: 51 LTKAICFGATT-DIPKGLSKNLGDLTVSRSPLKLLKNTSFQD--YQYLKWLDLSNNDISD 107
Query: 425 IGLHAFSGLEKLIYLNLSNNRLRYIPSDLFLG 520
I F L L LNL N++R + + +F G
Sbjct: 108 IQDGTFENLRYLKQLNLGENKIRTVSASMFKG 139
Score = 35.9 bits (79), Expect = 0.024
Identities = 20/43 (46%), Positives = 25/43 (58%)
Frame = +2
Query: 386 LKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNRLRYIPSDLF 514
LK LD+S NLI ++ AF+ KL L L NN +R I D F
Sbjct: 265 LKELDLSANLISYVSSTAFANNSKLQKLLLHNNTIRLIHEDAF 307
>SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)
Length = 535
Score = 41.1 bits (92), Expect = 6e-04
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +2
Query: 260 CVDQNIIDINVGVSKAVQVYSL--KHNVISELDNFCFKESGYTALKLLDISYNLIFWIGL 433
C N+ ++ +++SL N + + F F+ G++ +K L ++ N + IG
Sbjct: 10 CRLTNLTELRKHFDNTDRIHSLDLSSNQLKIIPEFVFR--GFSNVKNLTLADNDLEEIGN 67
Query: 434 HAFSGLEKLIYLNLSNNRLR 493
+ SGL+ L+YLNL+NN+LR
Sbjct: 68 ASLSGLKSLLYLNLANNKLR 87
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 38.7 bits (86), Expect = 0.003
Identities = 25/71 (35%), Positives = 38/71 (53%)
Frame = +2
Query: 308 VQVYSLKHNVISELDNFCFKESGYTALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNR 487
V + SL +N+IS + + F+ TAL+ L++ N + + F L L L+LS NR
Sbjct: 70 VSLLSLYNNLISTIHSNAFRN--LTALRSLNLGANRLSVLPRSVFRDLASLRSLDLSANR 127
Query: 488 LRYIPSDLFLG 520
L +P D F G
Sbjct: 128 LSSLPEDTFEG 138
Score = 34.7 bits (76), Expect = 0.055
Identities = 26/75 (34%), Positives = 37/75 (49%)
Frame = +2
Query: 305 AVQVYSLKHNVISELDNFCFKESGYTALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNN 484
A++ +L N +S L F++ +L+ LD+S N + + F GL L L L N
Sbjct: 93 ALRSLNLGANRLSVLPRSVFRD--LASLRSLDLSANRLSSLPEDTFEGLSSLQDLFLDFN 150
Query: 485 RLRYIPSDLFLGHTA 529
RLR IP F G A
Sbjct: 151 RLRAIPETTFHGLAA 165
>SB_51625| Best HMM Match : LRR_1 (HMM E-Value=2.7e-10)
Length = 212
Score = 37.5 bits (83), Expect = 0.008
Identities = 26/80 (32%), Positives = 43/80 (53%)
Frame = +2
Query: 281 DINVGVSKAVQVYSLKHNVISELDNFCFKESGYTALKLLDISYNLIFWIGLHAFSGLEKL 460
D +G++ ++ +L+ N I E++ F+ TAL+ L + N F IG +AF L L
Sbjct: 129 DFFLGLNN-IRTLNLRRNGIKEIEFGAFRN--LTALESLYLFRNRFFGIGPNAFERLTAL 185
Query: 461 IYLNLSNNRLRYIPSDLFLG 520
L+L +NRL + +F G
Sbjct: 186 QVLSLVDNRLTGLTRSMFSG 205
>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
Length = 2996
Score = 37.1 bits (82), Expect = 0.010
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +2
Query: 281 DINVG-VSKAVQVYSLKHNVISELDNFCFKESGY-TALKLLDISYNLIFWIGLHAFSGLE 454
++ VG + + L++N I + + F SG +++++LD+SYN I + AF+GL
Sbjct: 557 NVKVGQIGSGLATLHLQNNKIQAITSKIFGNSGSGSSIRILDLSYNEIRTLKEDAFAGLS 616
Query: 455 KLIYLNLSNNRLRYIP 502
+ L NN+L P
Sbjct: 617 SSYKVMLRNNKLIQSP 632
Score = 31.5 bits (68), Expect = 0.51
Identities = 23/66 (34%), Positives = 35/66 (53%)
Frame = +2
Query: 308 VQVYSLKHNVISELDNFCFKESGYTALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNR 487
VQV LK+N I ++N F + L+++D+S N I I L L L L+NN+
Sbjct: 353 VQVMYLKNNKIVAIENGAFPLN----LRVMDLSNNKIGRIDKIVLKDLVNLNSLLLNNNQ 408
Query: 488 LRYIPS 505
L +P+
Sbjct: 409 LTILPN 414
>SB_19770| Best HMM Match : LRR_1 (HMM E-Value=1.7e-06)
Length = 239
Score = 34.3 bits (75), Expect = 0.073
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +2
Query: 386 LKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNRLRYIPSDLFLG 520
L +D+S NL+ + H FSGLE L +NLS N + + + F G
Sbjct: 97 LMTVDLSRNLLKRVFKHYFSGLEDLKSVNLSRNVIECVEREAFEG 141
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +2
Query: 323 LKHNVISELDNFCFKESGYTALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNRLRYIP 502
L N++ + F SG LK +++S N+I + AF G + L ++ S NRL ++P
Sbjct: 102 LSRNLLKRVFKHYF--SGLEDLKSVNLSRNVIECVEREAFEGCKALSKVDFSGNRLIFVP 159
>SB_45522| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 395 LDISYNLIFWIGLHAFSGLEKLIYLNLSNNRLRYIPSDLF 514
LD+ YN I + G E L YL L++NR+ YI F
Sbjct: 4 LDLGYNAITNVTAADMKGKEMLFYLQLNDNRISYIEGGAF 43
>SB_55784| Best HMM Match : CUB (HMM E-Value=3.1e-25)
Length = 418
Score = 33.1 bits (72), Expect = 0.17
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 3/109 (2%)
Frame = +2
Query: 209 CPKQCDC-DMSNGLNRAICVD--QNIIDINVGVSKAVQVYSLKHNVISELDNFCFKESGY 379
CP C C D+ I V+ Q ++ + + + N IS L + Y
Sbjct: 190 CPSGCTCSDIMGDQQGRIVVESEQQLLAMPANLPSRTAAVMFQENRISSLTERNYHYLQY 249
Query: 380 TALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNRLRYIPSDLFLGHT 526
L D+S+N+I + AF+ + L +LS N L + + F G T
Sbjct: 250 --LLHFDLSFNIITNLNARAFTNVTSLDTFDLSRNLLTKLENGAFDGLT 296
>SB_19634| Best HMM Match : LRR_1 (HMM E-Value=2.6e-17)
Length = 267
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = +2
Query: 323 LKHNVISELDNFCFKESGYTALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNRLRYIP 502
L N ++E+ F L L ++YN I + F+G L L+L +N L IP
Sbjct: 84 LASNSLTEISGDVFNLPALVLLDELYLAYNKIAELDSKVFAGYSGLTVLDLHDNLLTSIP 143
Query: 503 SDLFL 517
D+ +
Sbjct: 144 EDIII 148
>SB_36392| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 32.7 bits (71), Expect = 0.22
Identities = 21/51 (41%), Positives = 26/51 (50%)
Frame = +2
Query: 362 FKESGYTALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNRLRYIPSDLF 514
F E GY LKL D+ YN I + G E L L L++NR+ YI F
Sbjct: 43 FWEKGY-GLKL-DLGYNAITNVTAADMKGKEMLFDLQLNDNRISYIEGGAF 91
>SB_11265| Best HMM Match : LRR_1 (HMM E-Value=0.23)
Length = 174
Score = 31.9 bits (69), Expect = 0.39
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 395 LDISYNLIFWIGLHAFSGLEKLIYLNLSNNRLRYIPSDLF 514
LD+ YN I + G E LI L L++NR+ YI + F
Sbjct: 44 LDLGYNAITNVTAADMKGKEMLISLQLNDNRISYIETGAF 83
>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
Length = 1058
Score = 31.5 bits (68), Expect = 0.51
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 236 SNGLNRAICVDQN--IIDINVGVSKAVQVYSLKHNVISELDNFCFKESG 376
SNGL+++I D N ++ I +K QVY H V E D+F E+G
Sbjct: 226 SNGLDKSITDDGNFGLVTIVRPGNKTFQVYPNHHTVYGEFDDFKAGETG 274
>SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)
Length = 870
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/103 (21%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Frame = +2
Query: 203 EFCPKQCDCDMSNGLNRAICVD---QNIIDINVGVSKAVQVYSLKHNVISELDNFCFKES 373
E CP++C C + +++ + VD + + + + +L+ N I EL + +
Sbjct: 482 ENCPRECTCAVRE-IDQTVLVDCSERGLHRLPFKMPAGELEVNLRGNAIRELPWRHYLGN 540
Query: 374 GYTALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNRLRYIP 502
+ +L++S N I + + L +++ L +++N+L+Y+P
Sbjct: 541 ----ITVLELSNNEIKELNMTFVDSLARVVNLAINDNKLKYLP 579
>SB_35110| Best HMM Match : LRR_1 (HMM E-Value=3.9e-09)
Length = 546
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 386 LKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNRLRYIPSDL 511
L+ LD+SYN + + A +E L L+L+ N +R +P ++
Sbjct: 87 LEKLDLSYNRLTGADILALGLMENLRTLHLTGNEIRRLPIEM 128
>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
Length = 874
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Frame = +2
Query: 170 FIAF----CISFVLSEFCPKQCDCDMSNGL 247
F+AF C+ F ++ CP C CD S G+
Sbjct: 16 FVAFLQPPCLCFGSAQECPSNCSCDESKGI 45
>SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1243
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +2
Query: 386 LKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNRLRYIPSDL 511
L++LD++ N I + ++ L +L +LNL NN++ +PS L
Sbjct: 123 LEVLDLANNFIRTLP-YSSGHLTRLRWLNLQNNQITNLPSSL 163
>SB_46788| Best HMM Match : LRR_1 (HMM E-Value=9.1e-12)
Length = 139
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +2
Query: 386 LKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNRLRYIPSDL 511
L++LD++ N I + ++ L +L +LNL NN++ +PS L
Sbjct: 22 LEVLDLANNFIRTLP-YSSGHLTRLRWLNLQNNQITNLPSSL 62
>SB_21029| Best HMM Match : PX (HMM E-Value=9.1e-15)
Length = 1466
Score = 28.7 bits (61), Expect = 3.6
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Frame = +2
Query: 269 QNIIDINVGVSKAVQVYSLKHNVISELDNFCFK-----ESGYTALKLLDISYNLIFWIGL 433
QN+ + + V K Q + L NV + D FK ES ++ L+ S+N I I
Sbjct: 930 QNLSHLKI-VGKGQQ-FHLSDNVDFKYDLSLFKSLSNLESLLPNIESLNWSHNCIEEIN- 986
Query: 434 HAFSGLEKLIYLNLSNNRLRYIPSDL 511
H S L +L L+LS+N+LR IP++L
Sbjct: 987 HLES-LSELEVLDLSHNKLRAIPTNL 1011
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/61 (27%), Positives = 34/61 (55%)
Frame = +2
Query: 308 VQVYSLKHNVISELDNFCFKESGYTALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNR 487
++ + HN I E+++ + L++LD+S+N + I + + L + LNL+NN+
Sbjct: 972 IESLNWSHNCIEEINHL----ESLSELEVLDLSHNKLRAIPTNLNAKLGNIRKLNLANNQ 1027
Query: 488 L 490
L
Sbjct: 1028 L 1028
>SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32)
Length = 1206
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 365 KESGYTALKLL--DISYNLIFWIGLHAFSGLEKLIYLNLSNNRLRYIPSDLF 514
+++G L L+ DI NLI I F+ + L LNL NN + I D F
Sbjct: 1106 RDTGIDLLTLVPTDIGNNLIKDIPSGVFANVRDLQVLNLHNNEITTIDEDTF 1157
>SB_35937| Best HMM Match : LRR_1 (HMM E-Value=7.1e-09)
Length = 224
Score = 28.7 bits (61), Expect = 3.6
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 386 LKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNRLRYIP-SDLFL 517
L+LLD+SYN + +I L L LNL N+L +P S LFL
Sbjct: 54 LELLDLSYNRLSFIPAD-IGKLRALRELNLEGNQLGAMPISTLFL 97
>SB_42679| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-08)
Length = 537
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +2
Query: 377 YTALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNN 484
YT L L +S N I I +AF GL L L+LS+N
Sbjct: 46 YTNLVTLILSNNEIIAIDENAFQGLTSLRNLSLSHN 81
>SB_41061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 63 NVFTLKWNNDAWIDE 19
N+ TLKW ND W++E
Sbjct: 56 NIVTLKWWNDMWLNE 70
>SB_31433| Best HMM Match : Prenyltransf (HMM E-Value=0.25)
Length = 214
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 179 FCISFVLSEFCPKQCDCDMSNGLNRA 256
FC+S E+ PKQ D D+ N + +A
Sbjct: 84 FCMSVKQKEYSPKQLDTDLFNDMLKA 109
>SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2229
Score = 27.9 bits (59), Expect = 6.3
Identities = 21/58 (36%), Positives = 34/58 (58%)
Frame = +2
Query: 338 ISELDNFCFKESGYTALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNRLRYIPSDL 511
+ ELD+ K+ + KL+ +S NL+ I ++ L++L L+L N+LR IPS L
Sbjct: 359 LRELDSSLLKKIRWPE-KLV-LSSNLLAGIS-NSIVDLDRLCRLDLQKNKLRKIPSGL 413
>SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 775
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/72 (22%), Positives = 38/72 (52%)
Frame = +2
Query: 287 NVGVSKAVQVYSLKHNVISELDNFCFKESGYTALKLLDISYNLIFWIGLHAFSGLEKLIY 466
++G + ++V ++ N + + + + TA+ +L + N + + + + KL
Sbjct: 497 SLGYLRKLRVLNIDENFLESIPS---ELGSCTAMTILSLRDNRLVHLP-DSIGRMPKLQV 552
Query: 467 LNLSNNRLRYIP 502
+NL++NRL Y+P
Sbjct: 553 INLASNRLEYLP 564
>SB_17109| Best HMM Match : LRR_1 (HMM E-Value=2.9e-10)
Length = 390
Score = 27.5 bits (58), Expect = 8.4
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +2
Query: 245 LNRAICVDQNIIDINVGVSKAVQVYSLKHNVISELDNFCFKESGYTALKLLDISYNLIFW 424
L R++ N+ D+N+ + +KH + +D S T LK LD+S N +
Sbjct: 207 LCRSLITFTNLTDLNLAYNL------IKHRDLEAIDGLASTFSILTNLKKLDLSENQLGS 260
Query: 425 IGLHAFSGLE-KLIYLNLSNNRLRYIPSDLFLG 520
L+ L +LN+ +R D F+G
Sbjct: 261 GVCQVLQSLKVNLTHLNIGGCGIRESELDAFMG 293
>SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12)
Length = 446
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 458 LIYLNLSNNRLRYIPSDLFL 517
LI L+LSNN++ IP+ LF+
Sbjct: 62 LIVLSLSNNKISVIPNQLFI 81
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,135,085
Number of Sequences: 59808
Number of extensions: 335617
Number of successful extensions: 836
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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