Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12h02f
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    40   2e-05
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         26   0.31 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   5.0  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    21   6.7  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   6.7  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    21   6.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 39.9 bits (89), Expect = 2e-05
 Identities = 25/69 (36%), Positives = 41/69 (59%)
 Frame = +2

Query: 314 VYSLKHNVISELDNFCFKESGYTALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNRLR 493
           V +L +N+++ +D   FK+  +  L++LD+  N I  I  +AF  L  L  L LS+N+LR
Sbjct: 339 VLNLSYNMLTHIDARMFKDLFF--LQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLR 396

Query: 494 YIPSDLFLG 520
            + + LF G
Sbjct: 397 TVGAQLFNG 405



 Score = 37.1 bits (82), Expect = 1e-04
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
 Frame = +2

Query: 209  CPKQCDC--DMSNGLNRAICVDQNIIDINVGVSK-AVQVYSLKHNVISELDNFCFKESGY 379
            CP  C C  D +   N   C    + +I   +   A +VY L  NV+ EL N  F   G 
Sbjct: 761  CPAGCKCYNDRTWNTNAVDCSGLGVEEIPRRIPMDATEVY-LDGNVLRELQNHVF--IGR 817

Query: 380  TALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNRLR 493
              +++L ++ + I  I    F+GL  L  L+L +NR+R
Sbjct: 818  KNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIR 855



 Score = 34.7 bits (76), Expect = 7e-04
 Identities = 25/65 (38%), Positives = 33/65 (50%)
 Frame = +2

Query: 308  VQVYSLKHNVISELDNFCFKESGYTALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNR 487
            +Q+  L+ N I EL  F F+   +  L+ L +  NLI +IG   F  L  L  L LS NR
Sbjct: 844  LQILHLEDNRIRELKGFEFERLSH--LRELYLQNNLIGFIGNLTFLPLRSLEILRLSGNR 901

Query: 488  LRYIP 502
            L   P
Sbjct: 902  LVTFP 906



 Score = 27.5 bits (58), Expect = 0.10
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = +2

Query: 308 VQVYSLKHNVISELDNFCFKESGYTALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNR 487
           ++ ++  +N +  L    F  +    L+ + ++YN +  +    F+ LE+L+ LNL+ NR
Sbjct: 263 LRTFNASYNSLDSLPEGLFAST--RDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNR 320

Query: 488 L 490
           L
Sbjct: 321 L 321



 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 374 GYTALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNRLRYI 499
           G   L  L+I  + +  + +++   L+ L  LNL+ NRLR I
Sbjct: 145 GLRELHTLEIVESNVQALPVNSLCSLDNLQTLNLTENRLRDI 186


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 292 NVYIDNVLVNTNSPVQPIRHVTVT 221
           N+  D  L+++N P+ P+RH  VT
Sbjct: 40  NIEPDTELMDSNEPLLPLRHRRVT 63


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -2

Query: 298 YSNVYIDNVLVNTNSPVQPIRHVTVTLFWTKLTEHKRNTKCN 173
           Y N+ +  +    N P  P+ +      WT  + H+ N KC+
Sbjct: 45  YQNLNLGEIYYIYN-PRYPLPYSGSKCTWTITSYHRINLKCS 85


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 544 SRCSSCGVSQKKIGRYISQSVV 479
           + CS C   QKKI   + Q ++
Sbjct: 73  NECSPCSEKQKKIADKVVQFLI 94


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 320 SLKHNVISELDNFCFKESGYTALKLLDISYN 412
           S+K    + L+N+    S YT L  +D+ +N
Sbjct: 4   SIKIITTTGLENWRVNNSNYTELLPIDMRFN 34


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 544 SRCSSCGVSQKKIGRYISQSVV 479
           + CS C   QKKI   + Q ++
Sbjct: 73  NECSPCSEKQKKIADKVVQFLI 94


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = -2

Query: 217  FWTKLTEHKRNTKCNKDKKPQRHYL 143
            F++        + CN D+KP  + L
Sbjct: 958  FYSSFLYKSSESSCNPDQKPTEYLL 982


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,675
Number of Sequences: 438
Number of extensions: 3192
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)