Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g24f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    27   0.10 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    26   0.18 
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    25   0.41 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   5.0  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   6.6  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 27.1 bits (57), Expect = 0.10
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 168 GFDMSSENPPTDRDPSLNRPGSPKPKRSTKPDLPPPALKVPVNEKK 305
           GF  + ++    +      P SP  K+S  P  PPP L+  VNE+K
Sbjct: 199 GFRENGKSSAKRKQLVSEHPDSPNSKKSATPS-PPPQLE--VNERK 241


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 26.2 bits (55), Expect = 0.18
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 162 NNGFDMSSENPPTDRDPSLNRPGSPKPKRSTKPDLPP 272
           N   D+S  +     D S+++P + KP+   KP + P
Sbjct: 239 NGPLDLSVSSRKRSNDDSVSQPPNRKPRTDFKPQVLP 275


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 25.0 bits (52), Expect = 0.41
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 192 PPTDRDPSLNRPGSPKPKRSTKPDLPPPALKVP 290
           PP + D   N P +    +    +LPP A+ VP
Sbjct: 216 PPPEEDDDSNIPQNNPKNKQHNFNLPPGAIPVP 248


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +3

Query: 258  PDLPPPALKVPVNEKKAFEDIEGAPERMMWSNQI 359
            P  PP +++V  N++ +       P R  W+  I
Sbjct: 995  PGGPPTSIRVETNDQHSLVVYWKPPAREEWNGDI 1028


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 231 SPKPKRSTKPDLP 269
           SP P  ST P+LP
Sbjct: 325 SPVPGHSTSPNLP 337


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,328
Number of Sequences: 336
Number of extensions: 3452
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)