Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g22r
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    62   6e-11
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    31   0.22 
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    29   0.67 
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc...    28   1.2  
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    27   3.6  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   4.7  
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    25   8.2  

>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 62.5 bits (145), Expect = 6e-11
 Identities = 33/85 (38%), Positives = 50/85 (58%)
 Frame = -1

Query: 394 AVYTINVYEDTDGAYQANPVIITPPNSIHILWLIPQYVVMTMGEVMFSVTGLEFSFTQAP 215
           AV    +Y+   G   AN       N I +   IP YV++   E+  S+TGLEF+FT+AP
Sbjct: 448 AVLQAKIYQR--GPCYANFTDTCVSNDISVWIQIPAYVLIAFSEIFASITGLEFAFTKAP 505

Query: 214 ASMKSVLQSVWLLTVAFGNLIVVLI 140
            SMKS++ +++L T AFG ++ + I
Sbjct: 506 PSMKSIITALFLFTNAFGAILSICI 530


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
 Frame = -1

Query: 574 VRFLSNVQTSVTVAIVESKKNKTKLSLQSDDISQVKITKGNG--DVLVNDQKVLEGYAFK 401
           +R   N Q  V +AIV+ ++N ++ S++S      KI K NG   + V+     +  A  
Sbjct: 66  IRLFWNTQGFVRLAIVQLEENVSEKSVRSAAAEAAKILKSNGAKSIAVDGMGFPKDAALG 125

Query: 400 SG-AVYTINVYEDTDGAYQANPVI 332
           +  A Y  ++  D    YQ   V+
Sbjct: 126 AALATYDFSLRRDHLSVYQDEKVV 149


>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -1

Query: 625 GISNFTDNNDKAINGVSVRFLSNVQTSVTVAIVESKKNKTKLSLQSDDISQVK 467
           G S+    N   +       ++N Q ++T  ++ES  N+ K ++  DD+S +K
Sbjct: 284 GNSSKNHKNQPKVAACIAEQVANGQKAITGVMIESHLNEGKQAIPEDDLSSMK 336


>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 706 RKLFEYRVQWKFLFKENTANSFFINREGISNFTDNND-KAINGVS 575
           + +F+Y  +       N   ++  N E +SN T+NN+ K+ING S
Sbjct: 72  QNVFDYAEKSLQADSSNLLPTYLYNSEDLSNDTENNETKSINGKS 116


>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 207 ILAGACVKENSKPVTENITSPIVITTY*GINQRMCI-LFGGVIITGFA**APSVSS*TLI 383
           IL  AC+K  + PV  N T  ++   Y  I   MC  L GG+ +T         S    +
Sbjct: 244 ILDNACLKIVTDPVPYNNTVMVMPNLYGDIVSDMCAGLIGGLGLTPSGNIGNQASIFEAV 303

Query: 384 V*TAPDL 404
             TAPD+
Sbjct: 304 HGTAPDI 310


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/61 (22%), Positives = 33/61 (54%)
 Frame = +3

Query: 87  PANKKNSFH*ASKKFPSTMRTTIKFPKATVRSQTDCSTDFILAGACVKENSKPVTENITS 266
           P++  +        FPS++ + +    +TVRS +  STD + + + +  +S  ++ +++S
Sbjct: 321 PSSSSSLVTIGESSFPSSLLSLLTQSFSTVRSTSSSSTDQLTSASPI--SSSVISPSVSS 378

Query: 267 P 269
           P
Sbjct: 379 P 379


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 150 TIKFPKATVRSQTDCSTDFILAGACVKENSKPVTENI 260
           T+K     V S+    +D ++  +CV +  +PVT NI
Sbjct: 186 TLKLYTLEVHSKKKDVSDTLIQFSCVNQFEEPVTSNI 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,173
Number of Sequences: 5004
Number of extensions: 63923
Number of successful extensions: 187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)