Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g22r
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1733| Best HMM Match : ATP-synt_C (HMM E-Value=4.5)                100   2e-21
SB_21872| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   1e-07
SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06)                    48   8e-06
SB_15812| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_49457| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.94 
SB_31672| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.2  
SB_44567| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_36772| Best HMM Match : WD40 (HMM E-Value=3.8e-05)                  28   8.8  
SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)         28   8.8  
SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)                    28   8.8  

>SB_1733| Best HMM Match : ATP-synt_C (HMM E-Value=4.5)
          Length = 168

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 50/84 (59%), Positives = 62/84 (73%)
 Frame = -1

Query: 295 IPQYVVMTMGEVMFSVTGLEFSFTQAPASMKSVLQSVWLLTVAFGNLIVVLIVEGNFLDA 116
           IPQYVV+T  EVMFSVTGL F+++QAP SMKSVLQS WLLTVAFG+LIVV++     +  
Sbjct: 44  IPQYVVITAAEVMFSVTGLGFAYSQAPNSMKSVLQSFWLLTVAFGDLIVVILSSAKPVKG 103

Query: 115 QWKEFFLFAGLMLLDMFIFTAMAF 44
             KE FL+ GLM +   IF  M++
Sbjct: 104 VEKEMFLYGGLMGVICIIFGIMSY 127


>SB_21872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
 Frame = -1

Query: 319 NSIHILWLIPQYVVMTMGEVMFSVTGLEFSFTQAPASMKSVLQSVWLLTVAFGNLIVVLI 140
           + + I + +PQ++++   EV  S+TGLEF+++QAP  ++ ++  ++L+T   GN +   +
Sbjct: 432 SDMSIFYQVPQFMLIGTSEVFTSITGLEFAYSQAPRCLQGLVMGIFLVTSGLGNYLASAL 491

Query: 139 VE-GNFLDAQW-----------KEFFLFAGLMLLDMFIFTAMAFRXQVRGSQIE 14
                 +D  W             FFL A LM+ +  I+  +A R +    Q E
Sbjct: 492 TNIVTSVDKSWYPTDPNTGHLENYFFLLAILMVANFIIYILVAMRYKYVAPQTE 545


>SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06)
          Length = 606

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 18/53 (33%), Positives = 36/53 (67%)
 Frame = -1

Query: 310 HILWLIPQYVVMTMGEVMFSVTGLEFSFTQAPASMKSVLQSVWLLTVAFGNLI 152
           +ILW +PQY ++ M EV  S+TGLE  ++  P++ +SV  +++ + +  G+++
Sbjct: 457 NILWQMPQYALLGMSEVFASMTGLEIVYSLCPSTPQSVTSAIYNIMICIGSIL 509


>SB_15812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 20/54 (37%), Positives = 36/54 (66%)
 Frame = -1

Query: 313 IHILWLIPQYVVMTMGEVMFSVTGLEFSFTQAPASMKSVLQSVWLLTVAFGNLI 152
           + I++ IPQY ++ + EV  SV GLEF++ +AP SM+S +  ++    + G+L+
Sbjct: 34  LSIMYQIPQYGLIGVSEVFASVGGLEFAYREAPPSMQSFVMGLFFFVQSIGSLL 87


>SB_49457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = -1

Query: 316 SIHILWLIPQYVVMTMGEVMFSVTGLEFSFTQAPASMKSVLQSVWLLT-VAFGNLIVVLI 140
           S H L L    V M  G++      L     + P  +   + SV +LT V  GNL+V  I
Sbjct: 608 SDHWLQLSTLMVTMVNGQIAML---LRLPVDEVPPEIDREVDSVGVLTLVLMGNLLVAFI 664

Query: 139 VEGNFLDAQW 110
             G+ L A W
Sbjct: 665 AAGSLLYAVW 674


>SB_31672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -3

Query: 398 WSSLHYQCLRRHGRCLSSKSSDYN--STK*YTHSLVDTSVRCDDYGRSDVF 252
           WS L  QCLR  GR L S   D    ST+ Y H++   +   D +  S  F
Sbjct: 4   WSGLTEQCLRFFGRSLRSLGPDGRVISTRWYLHTIAQGTTPPDMHDTSFCF 54


>SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -1

Query: 595 KAINGVSVRFLSN--VQTSVTVAIVESKKNKTKLSLQSDDISQVKITKGNG 449
           KA+  ++ R LS+  + +S      ES+K+  K  L SDDI+  K+  GNG
Sbjct: 592 KAMLSLAYRRLSSPRIFSSAADEPHESRKDTLKPGLDSDDIAVTKVKVGNG 642


>SB_44567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 759

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +3

Query: 162 PKATVRSQTDCSTDFILAGACVKENSKPVTENITSPIVITTY*GINQRMCILF 320
           P A     T  S D   A AC  EN     E+   PIV +TY    ++ C+LF
Sbjct: 158 PLAYFVHDTLSSIDHQKADACKNENG--AQESYNCPIVYSTYSRTCEKHCVLF 208


>SB_36772| Best HMM Match : WD40 (HMM E-Value=3.8e-05)
          Length = 788

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 395 SSLHYQCLRRHGRCLSSKSSDYNST--K*YTHSLVDTSVRCDDYGRSDVFSNW 243
           +SL  +  R+HG  L S++  Y +      T + ++  + CDD+   DV+  W
Sbjct: 154 NSLFERVERQHGHVLVSRALGYVTAAKSGLTETELEDLLSCDDFVLDDVYQYW 206


>SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
          Length = 1414

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 219 ACVKENSKPVTENITSPIV 275
           +CVKE S P+ +++TSPI+
Sbjct: 408 SCVKEKSHPLRKSLTSPIL 426


>SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1774

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -1

Query: 595 KAINGVSVRFLSNVQTSVTVAIVESKKNKTKLS 497
           K++NG++ R LSN   S+T+   ++ ++ T L+
Sbjct: 138 KSVNGINWRLLSNSSFSITLVSSDANQHSTGLN 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,631,267
Number of Sequences: 59808
Number of extensions: 470940
Number of successful extensions: 1254
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)