Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g22f
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    74   1e-14
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    31   0.13 
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.7  
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    26   5.0  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   6.5  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   6.5  
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    25   8.7  

>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 74.1 bits (174), Expect = 1e-14
 Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 11/146 (7%)
 Frame = +2

Query: 167 PKAVAFIVTNEFCERFSYYGMRTILSLYLR--------DKLGFTDNDATVIYHVFTMFAY 322
           P     I+  E CERF+YYG+      Y++          L   ++ A  + + FT + Y
Sbjct: 82  PWKAFIIIIVELCERFAYYGLTVPFQNYMQFGPKDATPGALNLGESGADGLSNFFTFWCY 141

Query: 323 FFPVLGAMIADGWLGRFRTIFYLSLVYATGSVLISLTAMPPI--GLPQFELTILALLLIA 496
             PV  A+IAD +LGR+ TI   +++Y  G ++++ TA+P +          +++L++I 
Sbjct: 142 VTPVGAALIADQFLGRYNTIVCSAVIYFIGILILTCTAIPSVIDAGKSMGGFVVSLIIIG 201

Query: 497 FGTGGIKPCVSAFGGDQF-KLPEQAK 571
            GTGGIK  VS    +Q  K+P   K
Sbjct: 202 LGTGGIKSNVSPLMAEQLPKIPPYVK 227


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 20/74 (27%), Positives = 33/74 (44%)
 Frame = +2

Query: 368 RFRTIFYLSLVYATGSVLISLTAMPPIGLPQFELTILALLLIAFGTGGIKPCVSAFGGDQ 547
           +F   +YLS +    S++   T      +  +   +L  LL+    GG  PC+S +    
Sbjct: 105 KFGPHYYLSAMIIGWSLVTIFTCF----VRHYWSLVLTRLLLGICEGGFFPCLSLYISMT 160

Query: 548 FKLPEQAKYLGYYF 589
           +K  EQ K L Y +
Sbjct: 161 YKREEQGKRLAYLY 174


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = +2

Query: 269 FTDNDATVIYHVFTMFAYFFPVLGAMIAD----GWLGRFRTIFYLSLVYATGSVLISLTA 436
           FT    T +   F  F Y  P++G +I D     +L  +R  F++++++A   ++     
Sbjct: 224 FTPVQRTYVLPGFCTFPYLGPIIGPIIGDFITQSYL-EWRWTFWINMIWAAAVIVFVFIF 282

Query: 437 MP 442
            P
Sbjct: 283 FP 284


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 344 MIADGWLGRFRTIFYLSLVYATGSVLISLTAMPPIGLP 457
           ++   W+G  + IF   L+Y   +  +S +++P  G P
Sbjct: 144 LVEPDWIGMSQAIFKTPLLYPKANDSLSTSSVPEYGNP 181


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +2

Query: 197 EFCERFSYYGMRTILSLYLRDKLGFTD 277
           EF ER  YY     L LY  DKL   D
Sbjct: 520 EFIERCIYYSADRSLELYDNDKLSSID 546


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 370 SSEPSIGNHGSENREEVSKHREHVV 296
           SS+PS  NHG+++   VS+++E  V
Sbjct: 697 SSQPSTINHGTDHINIVSENKETTV 721


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
 Frame = -3

Query: 280 IICEAQFVS--KVQRQNCSHSIIRESLTKLICDYERYC 173
           +IC   F    KV    C H   R  + K I DY   C
Sbjct: 322 VICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHAC 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,329,544
Number of Sequences: 5004
Number of extensions: 44976
Number of successful extensions: 114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)