Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12g22f
(609 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21872| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 4e-15
SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06) 75 5e-14
SB_40184| Best HMM Match : PTR2 (HMM E-Value=0) 71 6e-13
SB_25052| Best HMM Match : Prenyltrans (HMM E-Value=6.5) 52 3e-07
SB_15813| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_15975| Best HMM Match : NHL (HMM E-Value=5e-09) 33 0.18
SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011) 29 3.9
SB_59270| Best HMM Match : RVT_1 (HMM E-Value=7.8e-06) 29 3.9
SB_54087| Best HMM Match : RnaseH (HMM E-Value=0.0029) 29 3.9
SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016) 29 3.9
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
>SB_21872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 78.6 bits (185), Expect = 4e-15
Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 14/154 (9%)
Frame = +2
Query: 185 IVTNEFCERFSYYGMRTILSLYLRDKLGFTDNDATVIYHVFTMFAYFFPVLGAMIADGWL 364
I+ E CER ++YG+ L + D LGF + + +F YF PV G +AD ++
Sbjct: 49 ILLTELCERLTFYGITANLVPFCEDSLGFKRPMPSTVNLLFQGTCYFIPVFGGWLADTFM 108
Query: 365 GRFRTIFYLSLVYATGSVLISLTA------MPPIGLPQFEL--------TILALLLIAFG 502
GR+ I+ LVY G+VL + A + G L +I+AL++IAFG
Sbjct: 109 GRYNVIYGSCLVYFFGTVLFAAGACTTGDILNIFGKQTKYLSSSLRKASSIVALVVIAFG 168
Query: 503 TGGIKPCVSAFGGDQFKLPEQAKYLGYYFSLFYF 604
TGGIK VS FG DQ + + + + +F+ FY+
Sbjct: 169 TGGIKANVSPFGADQVQ-GKGPRAVQKFFNWFYW 201
>SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06)
Length = 606
Score = 74.9 bits (176), Expect = 5e-14
Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 11/155 (7%)
Frame = +2
Query: 176 VAFIVTNEFCERFSYYGMRTILSLYLRDKLGFTDNDATVIYHVFTMFAYFFPVLGAMIAD 355
+A ++ E CERF+YYG+ L+L D G++ A V+T A+F LG ++AD
Sbjct: 58 IACLILAEVCERFAYYGITINFVLFL-DNFGWSMFAAAGGVLVYTSVAWFMCALGGLLAD 116
Query: 356 GWLGRFRTIFYLSLVYATGSVLISLTAM----------PPIGLPQFELTILALLLIAFGT 505
G GR TI LVY GSVL+ L A+ +P +L +L +A G
Sbjct: 117 GRFGRHSTIISGLLVYYIGSVLLVLLAVWLDYRHKEPSDQDSIPILPWLVLIMLSVAAGE 176
Query: 506 GGIKPCVSAFGGDQFK-LPEQAKYLGYYFSLFYFA 607
G +K +SAF +QF+ + G + L++F+
Sbjct: 177 GAVKSNLSAFSAEQFQGESPSGSWKGIFTCLYWFS 211
>SB_40184| Best HMM Match : PTR2 (HMM E-Value=0)
Length = 421
Score = 71.3 bits (167), Expect = 6e-13
Identities = 37/71 (52%), Positives = 51/71 (71%)
Frame = +2
Query: 395 LVYATGSVLISLTAMPPIGLPQFELTILALLLIAFGTGGIKPCVSAFGGDQFKLPEQAKY 574
++YA G++++++T++P I L ++ LLLIA GTGGIKPCVSAFGGDQF Q
Sbjct: 1 MIYAFGNIVVAITSIPAI-LAKYWCHD-GLLLIAIGTGGIKPCVSAFGGDQFS-AAQENL 57
Query: 575 LGYYFSLFYFA 607
L +FS+FYFA
Sbjct: 58 LQSFFSIFYFA 68
>SB_25052| Best HMM Match : Prenyltrans (HMM E-Value=6.5)
Length = 242
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = +2
Query: 119 STMEHSMEAKTQKLPYP-KAVAFIVTNEFCERFSYYGMRTILSLYLRDKLGFTDNDATVI 295
S E + +LPY + + +E FS + +L LYL L F + I
Sbjct: 114 SFFEGRYDCSNSQLPYKVQDMNQDAKHENISAFSGFVFVAVLVLYLTKDLMFNKDKGKAI 173
Query: 296 YHVFTMFAYFFPVLGAMIADGWLGRFR 376
YH F+M +YF V+GAM+AD +LG+++
Sbjct: 174 YHAFSMVSYFTGVIGAMMADSFLGKYK 200
>SB_15813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 52.0 bits (119), Expect = 4e-07
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 20/161 (12%)
Frame = +2
Query: 185 IVTNEFCERFSYYGMRTILSLYLRDKLGFT-----------DNDATVIYHVFTMFAYFFP 331
I+ ER +YYG+ + L ++L ++ F N V +T A+F
Sbjct: 61 IILAVLLERTTYYGILSNLVVFLTTEMDFAFGSLGVGNSTISNGIIVSVFAYTGMAWFMS 120
Query: 332 VLGAMIADGWLGRFRTIFYLSLVYATGS----VLISLTAMPPIGLPQFE-----LTILAL 484
+G I D + G + I+ L+Y GS ++ L L ++ LTI L
Sbjct: 121 TVGGFIGDSYSGHYNAIYGSLLIYILGSGSLFMITVLLKYSSSSLNDYKELSVGLTIGTL 180
Query: 485 LLIAFGTGGIKPCVSAFGGDQFKLPEQAKYLGYYFSLFYFA 607
L+++ G G K +SAFG +Q + +K +F+ +Y+A
Sbjct: 181 LVLSIGEGTYKANISAFGAEQLS-SDDSKTYRQFFNWYYWA 220
>SB_15975| Best HMM Match : NHL (HMM E-Value=5e-09)
Length = 589
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 340 SENREEVSKHREHVV-DDCGVIICEAQFVSKVQRQNCSHSIIRESLTKLICDYE 182
++ RE+ K V+ D+C +C F+ NC+H++ R+ L + D E
Sbjct: 3 TKKREKAEKTLSGVINDECSCPVCLEDFLEPKSLPNCAHNVCRKCLEGMATDSE 56
>SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)
Length = 515
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 296 YHVFTMFAYFFPVLGAMIADGWLGRFRTIFYLSLVYATGSVLISLTAMPPIGLPQFE 466
++ F F+ VL +I D +G F+ S + +L+SL A PP+ LP F+
Sbjct: 431 FYCFPPFSCISKVLQKIIQDKAMGVMVVPFWPSQTWYP--ILMSLLARPPVKLPPFK 485
>SB_59270| Best HMM Match : RVT_1 (HMM E-Value=7.8e-06)
Length = 509
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 296 YHVFTMFAYFFPVLGAMIADGWLGRFRTIFYLSLVYATGSVLISLTAMPPIGLPQFE 466
++ F F+ VL +I D +G F+ S + +L+SL A PP+ LP F+
Sbjct: 425 FYCFPPFSCISKVLQKIIQDKAMGVMVVPFWPSQTWYP--ILMSLLARPPVKLPPFK 479
>SB_54087| Best HMM Match : RnaseH (HMM E-Value=0.0029)
Length = 318
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 296 YHVFTMFAYFFPVLGAMIADGWLGRFRTIFYLSLVYATGSVLISLTAMPPIGLPQFE 466
++ F F+ VL +I D +G F+ S + +L+SL A PP+ LP F+
Sbjct: 234 FYCFPPFSCISKVLQKIIQDKAMGVMVVPFWPSQTWYP--ILMSLLARPPVKLPPFK 288
>SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)
Length = 515
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 296 YHVFTMFAYFFPVLGAMIADGWLGRFRTIFYLSLVYATGSVLISLTAMPPIGLPQFE 466
++ F F+ VL +I D +G F+ S + +L+SL A PP+ LP F+
Sbjct: 431 FYCFPPFSCISKVLQKIIQDKAMGVMVVPFWPSQTWYP--ILMSLLARPPVKLPPFK 485
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 116 RSTMEHSMEAKTQKLPYPKAV 178
+ EH E +T+K+P PKAV
Sbjct: 2293 KENKEHGAEQRTEKIPEPKAV 2313
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,583,458
Number of Sequences: 59808
Number of extensions: 332729
Number of successful extensions: 746
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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