Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g22f
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    25   0.77 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   7.1  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 280 IICEAQFVSKVQRQNCSHSIIRESLTKL 197
           +IC A  +SK      +H II E+ TKL
Sbjct: 186 MICGATIISKRYVLTAAHCIIDENTTKL 213


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +2

Query: 137 MEAKTQ--KLPYPKAVAFIVTNEFCERFS 217
           +EA+T   K+PYP A+ F V   F   F+
Sbjct: 261 LEARTDLPKVPYPTALDFFVFLSFAFIFA 289


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -1

Query: 528 DTQGLIPPV 502
           DT+GL+PPV
Sbjct: 219 DTEGLLPPV 227


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 282 SLSVKPSLSRRYKDKIVRIP*YENLSQNSF 193
           +L   P  SRR      RI   ENLSQNS+
Sbjct: 273 TLFFHPLSSRREFAVSTRILRDENLSQNSY 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,154
Number of Sequences: 438
Number of extensions: 3444
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)