Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12g21f
(524 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4) 76 2e-14
SB_41172| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-21) 31 0.44
SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12) 28 5.4
SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_11926| Best HMM Match : UPAR_LY6 (HMM E-Value=0.0022) 27 9.5
SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36) 27 9.5
>SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4)
Length = 81
Score = 75.8 bits (178), Expect = 2e-14
Identities = 33/46 (71%), Positives = 41/46 (89%)
Frame = +2
Query: 386 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 523
S+SLIKQIPR+LGPGLNKAGKFP ++H E+M QKI++V+ TIKFQ
Sbjct: 28 SDSLIKQIPRILGPGLNKAGKFPTPINHNENMVQKIEDVRSTIKFQ 73
>SB_41172| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-21)
Length = 342
Score = 31.5 bits (68), Expect = 0.44
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 18/114 (15%)
Frame = -2
Query: 322 FQSLSIHTWHIQGFSLVTMLLVSKNA----NLHFRPRYVF*LYSAGETLVLLWVIVLQTN 155
+ S + TW + S +T+ +S LH R + +F + A L+++W+I L N
Sbjct: 100 YMSFELSTWLLLMSSFLTLTAISCERFAALTLHLRYQQMFTMKRAAMALIMIWLISLSLN 159
Query: 154 -LKLYSLQKVTF----------LVLRGLKNGIHALVERVTRH---FRRHFVCQR 35
++L L+ + + LVL L N + L++ V RH R H V QR
Sbjct: 160 VIRLLLLESLFWCITLTTVSICLVLILLTN--YVLIKAVQRHRKLIRSHQVVQR 211
>SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1161
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -2
Query: 298 WHIQGFSLVTMLLVSKNANLHFRPRYVF*LYSAGETLVLLWVIVLQTNLKLYSLQKVTFL 119
W I LV L+ + N + R ++VF + E L+ +W + +T L +Q F+
Sbjct: 296 WFIWTAVLVDALIQANNGSWRRRAQFVFTILFDIEALIKIWCVGFRTYLNSSRMQFFEFI 355
Query: 118 V 116
+
Sbjct: 356 L 356
>SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
Length = 1243
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +2
Query: 149 LQIGLKNYDPQKDKRFSGTVKLKYIPRPKM-QVC---VLGDQQHC 271
LQ G K YDP K+K K KY+ PK+ + C ++ +QHC
Sbjct: 336 LQCGKKFYDPLKEK----CAKNKYVYNPKIYKYCYGRIIPVKQHC 376
>SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 836
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -2
Query: 103 KNGIHALVERVTRHFRRHFVCQRTTYH 23
K G+H ++ +VT + RRH++ + T H
Sbjct: 284 KKGVHMILGQVTGNARRHYIPKFTANH 310
>SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1867
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = -2
Query: 298 WHIQGFSLVTMLLVSKNANLHFRPRYVF*LYSAGETLVLLWVIVLQTNLKLYSLQKVTFL 119
W I LV L+ + N + + ++VF + E L+ +W + +T L +Q F+
Sbjct: 395 WFIWFAVLVDALIQANNGSWRRQAQFVFTILFDIEALIKIWCVGFRTYLNSSRMQFFEFI 454
Query: 118 VLRG 107
+ G
Sbjct: 455 LAVG 458
>SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 929
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 403 ADSPFVGSRFEQSW*IPWSSLPPGVHDAED 492
+DSP+ G+ + W I S+ P VHD D
Sbjct: 725 SDSPYSGNSSGEDWDIYSSAQPTAVHDLPD 754
>SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1402
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +2
Query: 149 LQIGLKNYDPQKDKRFSGTVKLKYIPRPKM-QVC---VLGDQQHC 271
LQ G K YDP K+K K KY+ PK+ + C ++ +QHC
Sbjct: 336 LQCGKKFYDPLKEK----CAKNKYVYNPKIYKYCYGRIIPVKQHC 376
>SB_11926| Best HMM Match : UPAR_LY6 (HMM E-Value=0.0022)
Length = 190
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -2
Query: 322 FQSLSIHTWHIQGFSLVTMLLVSKNANL 239
+Q LS+H +H+ G ++ M + KN +
Sbjct: 37 YQQLSVHAYHLFGLPVLRMHVTQKNMKI 64
>SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)
Length = 646
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 92 NAVLQSSKDKKRNFLETVELQIGLKNYD 175
+A L+SS+DK R LE IGL N D
Sbjct: 164 DAALKSSEDKHRKKLEEAISNIGLTNTD 191
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,435,931
Number of Sequences: 59808
Number of extensions: 313001
Number of successful extensions: 668
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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